View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_16 (Length: 528)
Name: NF17265_low_16
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 20 - 521
Target Start/End: Original strand, 42604211 - 42604710
Alignment:
| Q |
20 |
ctttacatattgatgaggccaaacgaaatggctaacctctcactgtggttttctaattcagattcgttttccttctcaccttcaatgtttagtagaactt |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42604211 |
ctttccatattgatgaggccaaacgaaatggctaacctctcactgtggttttctaattcagattctttttccttctcaccttcaatgtttagtagaactt |
42604310 |
T |
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| Q |
120 |
ggcttgtgtcaggaacatgtccctccagtttcagtttctcccttatttccctcaactttgcatatatatcctgggtttgaggatgtgatttatcgcccac |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42604311 |
ggcttgtgtcag--acatgtccctccagtttcagtttctcccttatttccctcaactttgcatatatatcctgggtttgaggatgtgatttatcgcccac |
42604408 |
T |
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| Q |
220 |
tataaaccgatgaagttgacccttgtactcaatgatgctgcatccagcatccttaaccactcctctgtttttcatcatttctcttacatgtgaaacttta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42604409 |
tataaaccgatgaagttgacccttgtactcaatgatgctgcatccagcatccttaaccactcctctgtttttcatcatttctcttacatgtgaaacttta |
42604508 |
T |
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| Q |
320 |
tcccacttcccagctgcagcatacatgttagaaagtacagtatagcacccagtacgagcatctgaatccttttcaatcaaattacgggctgcatattcac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42604509 |
tcccacttcccagctgcagcatacatgttagaaagtacagtatagcacccagtacgagcatctgaatccttttcaatcaaattacgggctgcatattcac |
42604608 |
T |
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| Q |
420 |
caatttccaggtttccatggttcctagcaccaccaagcaaactcatccaaatgactttgttgggtttcacagtcactggcatgctctcaatgatattctt |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42604609 |
caatttccaggtttccatggttcctagcaccaccaagcaaactcatccaaatgactttgttgggtttcacagtcactggcatgctctcaatgatattttt |
42604708 |
T |
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