View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_low_17 (Length: 507)

Name: NF17265_low_17
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_low_17
NF17265_low_17
[»] chr6 (12 HSPs)
chr6 (1-499)||(6471779-6472277)
chr6 (77-247)||(6529216-6529386)
chr6 (20-265)||(6466293-6466538)
chr6 (84-235)||(6519573-6519724)
chr6 (81-247)||(6506507-6506673)
chr6 (76-247)||(6460812-6460983)
chr6 (76-232)||(6497689-6497845)
chr6 (408-489)||(13034930-13035011)
chr6 (76-235)||(6515092-6515251)
chr6 (93-202)||(7204144-7204254)
chr6 (93-202)||(7238895-7239005)
chr6 (108-190)||(6458424-6458506)
[»] chr7 (3 HSPs)
chr7 (76-226)||(9664312-9664462)
chr7 (108-220)||(3752846-3752958)
chr7 (108-220)||(4047280-4047392)
[»] chr4 (1 HSPs)
chr4 (76-226)||(13535336-13535486)


Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 6472277 - 6471779
Alignment:
Q  1 ttttctgttctatagaaattatggtgagatcagcattgaaaacttgatatatgaaagctgaattaaagtggtggaatggatatgaaactgaaagtgatga 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || || ||||| |||||||||||    
T  6472277 ttttctgttctatagaagttatggtgagatcagcattgaaaacttggtatatgaaagctgaattgaagtggtgaaaagggtaagaaacagaaagtgatga 6472178  T
Q  101 gtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggat 200  Q
    ||  || ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  6472177 gtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttgtagggaggggtgtggat 6472078  T
Q  201 agcaaatttggtgagaagaatttggaggggtcaggaagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgttaggcattgcag 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472077 agcaaatttggtgagaagaatttggaggggtcagggagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgttaggcattgcag 6471978  T
Q  301 ctgataggataatgatgaatgtcttaattattattgtggttttatagttttttaaggtatgtggtgagtgcaatttgtgtgttagattcttagtattttc 400  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6471977 ctgataggataatgatgaatgtcttaattatgattgtggttttatagttttttaaggtatgtggtgagtgcaatttttgtgttagattcttagtattttc 6471878  T
Q  401 agcattggatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaacctacccttt 499  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6471877 agcattagatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacatcaatgacaattaacctacccttt 6471779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 6529216 - 6529386
Alignment:
Q  77 tggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaa 176  Q
    |||||| ||||  |||||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6529216 tggataggaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaa 6529315  T
Q  177 gagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 247  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  6529316 gagtttgtagggaggggtgtggatagcagatttggagagaagaatttggaggggtcaggaaggacagtgga 6529386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 6466293 - 6466538
Alignment:
Q  20 tatggtgagatcagcattgaaaacttgatatatgaaagctgaattaaagtggtggaatggatatgaaactgaaagtgatgagtgcgaagatttgatgagg 119  Q
    ||||||||||||||  ||||||||||| ||||||||||  || || |||    |  |||| || ||||  |||||||||||||  ||||||||||||||     
T  6466293 tatggtgagatcagggttgaaaacttggtatatgaaagaagagttgaagaaacgagatgggtaagaaagagaaagtgatgagtttgaagatttgatgaga 6466392  T
Q  120 taaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaatttggtgagaaga 219  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  6466393 tatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtggggaggggtgtggatagcagatttggagagaaga 6466492  T
Q  220 atttggaggggtcaggaagaacagtggattgtatctgtgggaatag 265  Q
    | || | ||||||||| || || ||||| ||  |||||||||||||    
T  6466493 agtttgtggggtcagggaggaccgtggaatgagtctgtgggaatag 6466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 6519724 - 6519573
Alignment:
Q  84 gaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttg 183  Q
    ||||| |||||||||||||  || ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6519724 gaaacagaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttg 6519625  T
Q  184 tagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcagg 235  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  6519624 tagggaggggtttggatagtaaatttggagagaagaatttggaggggtcagg 6519573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 6506507 - 6506673
Alignment:
Q  81 tatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagt 180  Q
    ||||| || |||||||||||||  || |||||||||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  6506507 tatgagacagaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagt 6506606  T
Q  181 ttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 247  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||    
T  6506607 ttgtaggcaggggtgtggatagcagatttggagagaagaatttggaggggtcagggaggacagtgga 6506673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 6460983 - 6460812
Alignment:
Q  76 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 175  Q
    |||||||||| || ||||| |||||||  |||||| |||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||    
T  6460983 atggatatgagacagaaagagatgagttggaagatctgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaa 6460884  T
Q  176 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 247  Q
     |||||||||||||| ||| ||||||||| |||||  ||||||||||||||||||||||| || ||||||||    
T  6460883 ggagtttgtagggagtggtttggatagcagatttgaagagaagaatttggaggggtcagggaggacagtgga 6460812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 6497689 - 6497845
Alignment:
Q  76 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 175  Q
    ||||||||||||| |||||||||||||  || ||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||    
T  6497689 atggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaa 6497788  T
Q  176 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtc 232  Q
    ||||||||| ||||||||| | ||||||| ||||   ||||||||||||||||||||    
T  6497789 agagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtc 6497845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 408 - 489
Target Start/End: Complemental strand, 13035011 - 13034930
Alignment:
Q  408 gatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaa 489  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13035011 gatacaactcaatcttaggcaagttttacggtacacgataggctaatacttaaaaatttctcaaaacaccaatgacaattaa 13034930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 76 - 235
Target Start/End: Complemental strand, 6515251 - 6515092
Alignment:
Q  76 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 175  Q
    |||| |||||||  |||||||||||||  |  ||| |||||||||||||||| ||||||||||||   ||||| | | |||||  |||||||||||||||    
T  6515251 atgggtatgaaaaagaaagtgatgagtttgttgatctgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaagaa 6515152  T
Q  176 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcagg 235  Q
    ||||||||| ||||||||||| ||||| | |||||| |||||||| |||||||| |||||    
T  6515151 agagtttgtggggaggggtgtagatagaagatttggggagaagaacttggagggatcagg 6515092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 7204254 - 7204144
Alignment:
Q  93 agtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga-gg 191  Q
    |||| ||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | || |||| ||    
T  7204254 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggaggg 7204155  T
Q  192 ggtgtggatag 202  Q
    |||||||||||    
T  7204154 ggtgtggatag 7204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 7239005 - 7238895
Alignment:
Q  93 agtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga-gg 191  Q
    |||| ||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | || |||| ||    
T  7239005 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggaggg 7238906  T
Q  192 ggtgtggatag 202  Q
    |||||||||||    
T  7238905 ggtgtggatag 7238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 6458424 - 6458506
Alignment:
Q  108 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggag 190  Q
    ||||||||||||||||| |||||||| ||||||  |||||||||||  |||||||| |||||||||||||||||||| |||||    
T  6458424 gatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 9664462 - 9664312
Alignment:
Q  76 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 175  Q
    ||||||| ||||  ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  9664462 atggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaa 9664363  T
Q  176 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttgga 226  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||| |||||    
T  9664362 agagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 9664312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 3752958 - 3752846
Alignment:
Q  108 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaat 207  Q
    ||||||||||||||||| |||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |  |    
T  3752958 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 3752859  T
Q  208 ttggtgagaagaa 220  Q
    || ||||||||||    
T  3752858 tttgtgagaagaa 3752846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 4047280 - 4047392
Alignment:
Q  108 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaat 207  Q
    |||||||  |||||||| |||||||||||| |||| ||||||||||  |||||||| ||||||||||| |||||||||||||| ||||||||||| || |    
T  4047280 gatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagtttgtagggagaggtgtggatagtaagt 4047379  T
Q  208 ttggtgagaagaa 220  Q
    || ||||||||||    
T  4047380 tttgtgagaagaa 4047392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 13535486 - 13535336
Alignment:
Q  76 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 175  Q
    ||||||| ||||  ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13535486 atggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaa 13535387  T
Q  176 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttgga 226  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||| |||||    
T  13535386 agagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 13535336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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