View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_low_2 (Length: 757)

Name: NF17265_low_2
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_low_2
NF17265_low_2
[»] scaffold0088 (3 HSPs)
scaffold0088 (189-741)||(46914-47465)
scaffold0088 (19-103)||(46576-46660)
scaffold0088 (101-200)||(46791-46890)
[»] chr4 (4 HSPs)
chr4 (250-331)||(11314441-11314522)
chr4 (249-329)||(27918506-27918586)
chr4 (262-339)||(42380866-42380943)
chr4 (265-329)||(42170570-42170634)
[»] chr3 (4 HSPs)
chr3 (245-345)||(1214866-1214965)
chr3 (248-296)||(55290326-55290374)
chr3 (245-298)||(41935957-41936010)
chr3 (289-330)||(43978456-43978497)
[»] chr2 (3 HSPs)
chr2 (250-350)||(11129509-11129609)
chr2 (262-323)||(21425054-21425115)
chr2 (249-330)||(28694479-28694560)
[»] chr7 (2 HSPs)
chr7 (248-330)||(40343294-40343376)
chr7 (54-83)||(36272091-36272120)
[»] chr5 (4 HSPs)
chr5 (250-330)||(40279675-40279755)
chr5 (245-345)||(41954677-41954776)
chr5 (250-338)||(15711128-15711214)
chr5 (50-100)||(9227831-9227881)
[»] chr1 (3 HSPs)
chr1 (250-330)||(21937922-21938002)
chr1 (256-330)||(9001595-9001669)
chr1 (245-298)||(4226288-4226341)
[»] chr8 (3 HSPs)
chr8 (245-338)||(33822151-33822244)
chr8 (249-327)||(5374500-5374578)
chr8 (249-330)||(23052134-23052215)
[»] chr6 (1 HSPs)
chr6 (307-341)||(8543497-8543531)


Alignment Details
Target: scaffold0088 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 189 - 741
Target Start/End: Original strand, 46914 - 47465
Alignment:
Q  189 ataagagacata-ttttatgggcaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattctttgatatcgtaaagtga 287  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46914 ataagagacatacttttacggacaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattctttgatattgtaaagtga 47013  T
Q  288 catataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatggaatataatttaattgttggtgtttttcttttacctattttcat 387  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  47014 catataatttgaaacaaataaattttgctagaatgacatataaagtggaacagatggaatataatttaattgttggt--ttttcttttaccttttttcat 47111  T
Q  388 ttctgtgaatatctagggatgtaatcaacttgatatgagtaaaaggagagaattaatgcctttggcctctatataaatgatcattgtagttttgttgttt 487  Q
    |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47112 ttctgtcaatatctacggatgtaatcaacttgatatgagtaaaaagagagaattaatgtctttggcctctatataaatgatcattgtagttttgttgttt 47211  T
Q  488 ttattcagaagatgatgtccggtgcaccacaacaaagatacgaaatgctcgaaacagcaacggatttgttaaaatctggtcaaaagagtgtgatagaggc 587  Q
    ||||||||||||||||||||| |||||||||||||||||||||  ||||||||| | ||||||| |||||||||||||||||| ||||||||||| ||||    
T  47212 ttattcagaagatgatgtccgctgcaccacaacaaagatacgatttgctcgaaaaaacaacggaattgttaaaatctggtcaagagagtgtgataaaggc 47311  T
Q  588 atcacttgaatatcttcgagtaaaagcaaagattacggtcagttatcttctctatctaatgtatcatcgacatatttataacgataaagggtctcaaaat 687  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47312 atcacttgaatatcttcaagtaaaagcaaagattacggtctgttatcttctctatctaatgaatcatcgacatatttataacgataaagggtctcaaaat 47411  T
Q  688 gaatcctatcnnnnnnnatatgggtgatttcatcgtaactaagcttcatgtaac 741  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||    
T  47412 gaatcctatctttttttatatgggtgatttcatcgtaactaagcttcatgtaac 47465  T

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Target: scaffold0088; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 46576 - 46660
Alignment:
Q  19 agtacgatatacaataaattataatccatcgttttatcttttttcaattcttttaatttatatttctcgtatgattaataaaaaa 103  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46576 agtacgatatacaataaattataatccatcgtcttatcttttttcaattcttttaatttatatttctcgtatcattaataaaaaa 46660  T

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Target: scaffold0088; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 46791 - 46890
Alignment:
Q  101 aaacactttacgttattggtgttttgcattaattttaaacatgaaatttattggctctctcnnnnnnntaaatttgttggttttcgatataagagacata 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||       |||||||||||||||| |||||||||||||||    
T  46791 aaacactttacgttattggtgatttgcattaattttaaacatgaaatttataggctctctcaaaaaaataaatttgttggtttttgatataagagacata 46890  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 11314441 - 11314522
Alignment:
Q  250 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaa 331  Q
    ||||||||||| |||||||||||||||| ||||| ||| ||||||||||||  |||||||||||| ||||||||||||||||    
T  11314441 aaaataaacattaatgattctttgatattgtaaaatgatatataatttgaaacaaataaattttggtagaatgacatataaa 11314522  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 27918506 - 27918586
Alignment:
Q  249 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatata 329  Q
    |||||||| ||| |||||||| ||||||| ||||| ||||||||||||||||  ||| |||||||||||||||||||||||    
T  27918506 gaaaataagcattaatgattcattgatattgtaaaatgacatataatttgaaagaaacaaattttgctagaatgacatata 27918586  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 42380866 - 42380943
Alignment:
Q  262 aatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaaca 339  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||| |||||||| |||||| ||||||||  |||||||    
T  42380866 aatgattctttgatattgtaaagtgacatagaatttgaaacaaacaaattttgttagaattacatataatttggaaca 42380943  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 42170634 - 42170570
Alignment:
Q  265 gattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatata 329  Q
    ||||||||||||| ||||| |||||||||| ||| |  ||||| |||||||||||||||||||||    
T  42170634 gattctttgatattgtaaaatgacatataacttggaacaaatagattttgctagaatgacatata 42170570  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 245 - 345
Target Start/End: Original strand, 1214866 - 1214965
Alignment:
Q  245 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatgg 344  Q
    |||||||||||||| | |||||||| ||| ||| ||||||||||||||||||||||  |||| ||||||| |||||||||||||||  |||||| |||||    
T  1214866 ataggaaaataaacgtcaatgattccttgttattgtaaagtgacatataatttgaa-caaatgaattttggtagaatgacatataatttggaacggatgg 1214964  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 55290326 - 55290374
Alignment:
Q  248 ggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatt 296  Q
    ||||||||||||| |||||||| |||||||| |||| ||||||||||||    
T  55290326 ggaaaataaacattaatgattcattgatatcttaaaatgacatataatt 55290374  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 41936010 - 41935957
Alignment:
Q  245 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttg 298  Q
    |||||||||| ||||| |||||||| ||| ||| |||||| |||||||||||||    
T  41936010 ataggaaaattaacattaatgattcattggtattgtaaagcgacatataatttg 41935957  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 43978456 - 43978497
Alignment:
Q  289 atataatttgaagtaaataaattttgctagaatgacatataa 330  Q
    |||||||||| | |||||||||||||||| ||||||||||||    
T  43978456 atataatttggaataaataaattttgctaaaatgacatataa 43978497  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 11129609 - 11129509
Alignment:
Q  250 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatggaatat 349  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||  |  ||| |||||||| |||||||||||||||  || ||| ||||||||||    
T  11129609 aaaataaacattaatgattccttgatattgtaaagtgacatataatttagaacaaacaaattttgttagaatgacatataatttgaaacggatggaatat 11129510  T
Q  350 a 350  Q
    |    
T  11129509 a 11129509  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 21425115 - 21425054
Alignment:
Q  262 aatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatga 323  Q
    ||||||||||||| || |||||||||| ||||||||| |  ||| |||||||||||||||||    
T  21425115 aatgattctttgacattgtaaagtgacgtataatttggaacaaacaaattttgctagaatga 21425054  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 28694479 - 28694560
Alignment:
Q  249 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 330  Q
    |||| ||| ||| ||| ||||||| |||| ||||| |||||| ||||||| |  ||||||||||||||| ||| ||||||||    
T  28694479 gaaattaagcattaataattctttaatattgtaaaatgacatgtaatttggaacaaataaattttgctaaaataacatataa 28694560  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 40343376 - 40343294
Alignment:
Q  248 ggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 330  Q
    |||||||||| || |||||||| |||||||||||||||||||||||||||  | |||| ||||||| ||| ||||||||||||    
T  40343376 ggaaaataaaaattaatgattccttgatatcgtaaagtgacatataatttagaataaacaaattttactaaaatgacatataa 40343294  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 36272120 - 36272091
Alignment:
Q  54 atcttttttcaattcttttaatttatattt 83  Q
    ||||||||||||||||||||||||||||||    
T  36272120 atcttttttcaattcttttaatttatattt 36272091  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 40279675 - 40279755
Alignment:
Q  250 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 330  Q
    |||| |||||| |||||||| || |||| ||||||||| |||||||||||| |||| |||||||| |||||||||||||||    
T  40279675 aaaaaaaacattaatgattcattaatattgtaaagtgatatataatttgaaataaacaaattttgttagaatgacatataa 40279755  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 245 - 345
Target Start/End: Original strand, 41954677 - 41954776
Alignment:
Q  245 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatgg 344  Q
    |||||||||||||| | |||||||| ||| ||| |||||||||||||||||||| |  |||| ||||||| |||||||||||||||  |||||| |||||    
T  41954677 ataggaaaataaacgtcaatgattccttgttattgtaaagtgacatataatttgga-caaatgaattttggtagaatgacatataatttggaacggatgg 41954775  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 15711128 - 15711214
Alignment:
Q  250 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaac 338  Q
    |||||||| || ||| |||||||||||| |||||||||||||||||||||   ||| |||||||| || |||||| |||||||||||||    
T  15711128 aaaataaatattaataattctttgatattgtaaagtgacatataatttga--caaacaaattttgttaaaatgacttataaagtggaac 15711214  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 9227881 - 9227831
Alignment:
Q  50 ttttatcttttttcaattcttttaatttatatttctcgtatgattaataaa 100  Q
    |||||||||||||||||||||||||||||| ||| || ||  |||||||||    
T  9227881 ttttatcttttttcaattcttttaatttatgtttttcatacaattaataaa 9227831  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 21938002 - 21937922
Alignment:
Q  250 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 330  Q
    ||||||| ||| |||||||| |||||||  |||| ||||||||||||||| | |||||||||||| |||||||||||||||    
T  21938002 aaaataagcatcaatgattcattgatattataaaatgacatataatttgaggcaaataaattttgttagaatgacatataa 21937922  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 9001669 - 9001595
Alignment:
Q  256 aacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 330  Q
    ||||| |||||||| ||||||| ||||||||||||||||||| ||  ||| |||||||| || ||||||||||||    
T  9001669 aacattaatgattcattgatattgtaaagtgacatataatttaaaacaaacaaattttgttaaaatgacatataa 9001595  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 4226341 - 4226288
Alignment:
Q  245 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttg 298  Q
    |||||||||  ||||| |||| ||| ||||||| ||||||||||||||||||||    
T  4226341 ataggaaaagtaacattaatgtttcattgatattgtaaagtgacatataatttg 4226288  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 33822244 - 33822151
Alignment:
Q  245 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaac 338  Q
    |||||||||||  ||| |||||||| ||||||| |||| ||  | ||||||||| |  ||||||||||||||||||||||||||||||| ||||    
T  33822244 ataggaaaatacgcattaatgattccttgatattgtaaggtcgcgtataatttggaacaaataaattttgctagaatgacatataaagtagaac 33822151  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 5374578 - 5374500
Alignment:
Q  249 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacata 327  Q
    |||||||||||| ||||||||  |||||| ||||| |||||||||||||| |  ||| ||||||| ||| |||||||||    
T  5374578 gaaaataaacattaatgattcaatgatattgtaaaatgacatataatttggaacaaacaaattttactaaaatgacata 5374500  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 23052215 - 23052134
Alignment:
Q  249 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 330  Q
    ||||| |||||| |||||||| || |||| ||||||||||||||||||| ||  ||| |||||||||| | |||| ||||||    
T  23052215 gaaaaaaaacattaatgattccttaatattgtaaagtgacatataatttaaaacaaacaaattttgctcggatgatatataa 23052134  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 8543531 - 8543497
Alignment:
Q  307 aaattttgctagaatgacatataaagtggaacaga 341  Q
    ||||||||||| |||||||||||||||||||||||    
T  8543531 aaattttgctaaaatgacatataaagtggaacaga 8543497  T

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