View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_low_21 (Length: 479)

Name: NF17265_low_21
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_low_21
NF17265_low_21
[»] chr8 (8 HSPs)
chr8 (1-437)||(5861062-5861491)
chr8 (13-77)||(5891783-5891847)
chr8 (155-239)||(25129706-25129790)
chr8 (432-463)||(5860627-5860658)
chr8 (242-341)||(25391439-25391538)
chr8 (1-35)||(5861645-5861679)
chr8 (242-336)||(25358413-25358507)
chr8 (242-415)||(25677989-25678162)
[»] scaffold0360 (2 HSPs)
scaffold0360 (1-175)||(15672-15845)
scaffold0360 (328-463)||(15107-15242)
[»] chr6 (1 HSPs)
chr6 (153-367)||(34249323-34249537)
[»] scaffold0009 (1 HSPs)
scaffold0009 (200-370)||(3186-3356)
[»] chr1 (2 HSPs)
chr1 (242-367)||(29360205-29360330)
chr1 (154-367)||(5716854-5717064)
[»] chr5 (1 HSPs)
chr5 (216-362)||(32743581-32743727)
[»] scaffold0466 (1 HSPs)
scaffold0466 (213-323)||(8260-8370)
[»] chr3 (1 HSPs)
chr3 (154-254)||(25079921-25080019)
[»] chr2 (1 HSPs)
chr2 (79-144)||(2471952-2472017)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 5861491 - 5861062
Alignment:
Q  1 aaagttgctagtttatgttctccaaggcatacgtaggtaggcagtcctctactagtaccacttatcacttttgttcacgagaaatacttgctaggggacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5861491 aaagttgctagtttatgttctccaaggcatacgtaggtaggcagtcctctactagtaccacttatcacttttgttcatgagaaatacttgctaggggacg 5861392  T
Q  101 aacccaaatctaaaagatttagacacatttacataattgatgttttttgttgttgttggaaacattaaaagtaaattagaatttggatagttagaaatga 200  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5861391 aacccaaatctaaaagatttagacacatttacat-------gttttttgttgttgttggaaacattaaaagtaaattagaatttggatagttagaaatga 5861299  T
Q  201 tagaaaagtgttttgttgtgccgtggtcaaaactactgctctgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaa 300  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||||    
T  5861298 tagaaaagagttttgttgtgccgtggtcaaaactactgctctgaaagcaaattttcggtggacctttgatgcaacttaatatccgattttgcttctcaaa 5861199  T
Q  301 atttacacaactgtgtgtctgaatcagtgcactcgacgccaaatatgatggagcttcacaaataatgtcctgaataaatgaaagtagaatagaaagcatg 400  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5861198 atttacacaactgtgtgtctgaaccaatgcactcgacgccaaatataatggagcttcacaaataatgtcctgaataaatgaaagtagaatagaaagtatg 5861099  T
Q  401 aactttatttttgaccaccaattggccaattcagggc 437  Q
    |||||||||||||||||||||||||||||| ||||||    
T  5861098 aactttatttttgaccaccaattggccaatacagggc 5861062  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 5891783 - 5891847
Alignment:
Q  13 ttatgttctccaaggcatacgtaggtaggcagtcctctactagtaccacttatcacttttgttca 77  Q
    |||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  5891783 ttatgttctctagggcatacgtaggcagccagtcctctactagtaccacttatcacttttgttca 5891847  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 25129790 - 25129706
Alignment:
Q  155 gttggaaacattaaaagtaaattagaatttggatagttagaaatgatagaaaagtgttttgttgtgccgtggtcaaaactactgc 239  Q
    |||||||| ||||| |||||| |||||||  ||||||||| || ||| ||| || ||| ||||||||||||| |||||| |||||    
T  25129790 gttggaaatattaagagtaaaatagaattgagatagttaggaaagatcgaagagagttatgttgtgccgtggacaaaaccactgc 25129706  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 463
Target Start/End: Complemental strand, 5860658 - 5860627
Alignment:
Q  432 cagggcaaaggcatttccacatatgttcatct 463  Q
    ||||||||||||||||||||||||||||||||    
T  5860658 cagggcaaaggcatttccacatatgttcatct 5860627  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 341
Target Start/End: Complemental strand, 25391538 - 25391439
Alignment:
Q  242 tgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaatcagtgcactcgacgcca 341  Q
    ||||||||||||||| |||||||  || ||||||  |||||||| ||||||| | |||  ||||||||||| ||| ||||||   |||||||||| ||||    
T  25391538 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgaggcca 25391439  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5861679 - 5861645
Alignment:
Q  1 aaagttgctagtttatgttctccaaggcatacgta 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  5861679 aaagttgctagtttatgttctccagggcatacgta 5861645  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 336
Target Start/End: Complemental strand, 25358507 - 25358413
Alignment:
Q  242 tgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaatcagtgcactcga 336  Q
    ||||||||||||||| |||||||  || ||||||  |||||||| ||||||| | |||  ||||||||||| ||| ||||||   ||||||||||    
T  25358507 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcga 25358413  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 415
Target Start/End: Complemental strand, 25678162 - 25677989
Alignment:
Q  242 tgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaatcagtgcactcgacgcca 341  Q
    ||||||||||||||| |||||||  || ||||||  |||||||| ||||||||  |||  |||||||||||  || ||||||   |||||||||| |||     
T  25678162 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctttccaaggtttacacaactacgtatctgaactcgtgcactcgaggcc- 25678064  T
Q  342 aatatgatggagcttcacaaataatgtcctgaataaatgaaagtagaata-gaaagcatgaactttatttttgac 415  Q
    |  ||| |||||||||||||| |||| ||  ||||| ||| | |||||||  |||  |||||||| |||||||||    
T  25678063 agcatgttggagcttcacaaacaatgcccaaaataattgagaatagaatataaaataatgaacttgatttttgac 25677989  T

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Target: scaffold0360 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 15845 - 15672
Alignment:
Q  1 aaagttgctagtttatgttctccaaggcatacgtaggtaggcagtcctctactagtaccacttatcacttttgttcacgagaaatacttgctaggggacg 100  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  15845 aaagttgctagtttatgttctcgaaggcatacgtaggtagtcagtcctctaccagtaccacttatcacttttgttcacgagaaatacttgctagggaacg 15746  T
Q  101 aacccaaatctaaaagatttagacacatttacata-attgatgttttttgttgttgttggaaacattaaaagtaaa 175  Q
    |||||||||| |||||||||||||||||||||||| ||| |||  |||||||||||||||||| ||||| ||||||    
T  15745 aacccaaatccaaaagatttagacacatttacatatattaatg--ttttgttgttgttggaaatattaagagtaaa 15672  T

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Target: scaffold0360; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 328 - 463
Target Start/End: Complemental strand, 15242 - 15107
Alignment:
Q  328 tgcactcgacgccaaatatgatggagcttcacaaataatgtcctgaataaatgaaagtagaatagaaagcatgaactttatttttgaccaccaattggcc 427  Q
    |||||||||  ||||| |||| | ||||||||||| ||| |||  ||||| ||| | || |||||||||||||||||| ||||||||||||| ||| |||    
T  15242 tgcactcgagaccaaacatgacgaagcttcacaaacaatatccaaaataattgagaataaaatagaaagcatgaacttaatttttgaccacccatttgcc 15143  T
Q  428 aattcagggcaaaggcatttccacatatgttcatct 463  Q
    ||| || | |||||||||||||||||||| ||||||    
T  15142 aatgcacgacaaaggcatttccacatatgctcatct 15107  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 153 - 367
Target Start/End: Complemental strand, 34249537 - 34249323
Alignment:
Q  153 ttgttggaaacattaaaagtaaattagaatttggatagttagaaatgatagaaaagtgttttgttgtgccgtggtcaaaactactgctctgaaagcaaat 252  Q
    |||||||||| ||||| || ||| |||||||  || |||||| ||||||||| ||| |||||||||||||||||||||||| | ||||||||||| ||||    
T  34249537 ttgttggaaatattaagagaaaactagaattgagagagttaggaatgatagagaagagttttgttgtgccgtggtcaaaaccattgctctgaaagaaaat 34249438  T
Q  253 tttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaatcagtgcactcgacgccaaatatgatgga 352  Q
    |||| |||||||  |  ||||| | | |||||  ||||||| | ||| ||||||| |||||  ||||||||   ||||||||||   |||| | ||||||    
T  34249437 tttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatcaaacacgatgga 34249338  T
Q  353 gcttcacaaataatg 367  Q
    |||||| ||| ||||    
T  34249337 gcttcataaacaatg 34249323  T

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Target: scaffold0009 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 370
Target Start/End: Original strand, 3186 - 3356
Alignment:
Q  200 atagaaaagtgttttgttgtgccgtggtcaaaactactgctctgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaa 299  Q
    |||||| || ||||||||||||||||| ||||||   | | |||||||||||||||  ||| | |  || ||||||| ||||||||||||| || |||||    
T  3186 atagaagagagttttgttgtgccgtggccaaaacctttaccctgaaagcaaatttttggtgaaactccggtgcaattcaatatccgattttactcctcaa 3285  T
Q  300 aatttacacaactgtgtgtctgaatcagtgcactcgacgccaaatatgatggagcttcacaaataatgtcc 370  Q
      |||| |||| |  ||||||||| | |||||||||| | |||| | ||||||||||||||||||||||||    
T  3286 ggtttatacaatttcgtgtctgaacccgtgcactcgaggtcaaacacgatggagcttcacaaataatgtcc 3356  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 367
Target Start/End: Complemental strand, 29360330 - 29360205
Alignment:
Q  242 tgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaatcagtgcactcgacgcca 341  Q
    ||||||||||||||| |||||||  || |||||   |||||||||||||||| |||||  |||||||||||| ||||||||||  ||||||| || ||||    
T  29360330 tgaaagcaaattttcggtggacctccggtgcaacccaatatccgattttgctcctcaaggtttacacaactgcgtgtctgaattcgtgcacttgaggcca 29360231  T
Q  342 aatatgatggagcttcacaaataatg 367  Q
    || | |||||||||||| ||| ||||    
T  29360230 aacacgatggagcttcataaacaatg 29360205  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 367
Target Start/End: Complemental strand, 5717064 - 5716854
Alignment:
Q  154 tgttggaaacattaaaagtaaattagaatttggatagttagaaatgatagaaaagtgttttgttgtgccgtggtcaaaactactgctctgaaagcaaatt 253  Q
    ||||||||| ||||| |||||| |||||||| || |||||| || ||||||| || |||  ||||||||||||| ||||| ||||| ||||| |||||||    
T  5717064 tgttggaaatattaagagtaaactagaatttagagagttaggaaagatagaagagagtt--gttgtgccgtggtaaaaaccactgccctgaatgcaaatt 5716967  T
Q  254 ttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaa-tcagtgcactcgacgccaaatatgatgga 352  Q
    | | ||| ||   || |||||   ||  |||||||||||| | ||||||||||||||||| |||||| || ||| | ||||||| | |||| | ||||||    
T  5716966 tccggtgtacttccggtgcaacccaa-gtccgattttgctccccaaaatttacacaactgcgtgtctaaactca-tccactcgaagtcaaaaacgatgga 5716869  T
Q  353 gcttcacaaataatg 367  Q
    |||||||||||||||    
T  5716868 gcttcacaaataatg 5716854  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 32743581 - 32743727
Alignment:
Q  216 ttgtgccgtggtcaaaactactgctctgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaactgtg 315  Q
    ||||| ||||| |||||||||| | |||||||||||||| | |||||||  ||||||||| |||| |||   |||||| | |||  ||||||||||||      
T  32743581 ttgtgtcgtggccaaaactactaccctgaaagcaaatttccggtggacctccgatgcaatctaatttcctgatttgctccccaaggtttacacaactgct 32743680  T
Q  316 tgtctgaa-tcagtgcactcgacgccaaatatgatggagcttcacaaa 362  Q
    |||||||| ||| |||||| || |||||| | ||||||||||||||||    
T  32743681 tgtctgaactca-tgcacttgaggccaaacacgatggagcttcacaaa 32743727  T

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Target: scaffold0466 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 323
Target Start/End: Original strand, 8260 - 8370
Alignment:
Q  213 ttgttgtgccgtggtcaaaactactgctctgaaagcaaattttcagtggaccctcgatgcaatttaatatccgattttgcttctcaaaatttacacaact 312  Q
    |||||| |||||||  ||| | |||||  ||||||||||||| || ||||||   | |||||||||||||||| ||||||| | |||  |||||||||||    
T  8260 ttgttgcgccgtggcaaaagcaactgccatgaaagcaaatttccaatggacctctggtgcaatttaatatccggttttgctccccaatgtttacacaact 8359  T
Q  313 gtgtgtctgaa 323  Q
      |||||||||    
T  8360 acgtgtctgaa 8370  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 25079921 - 25080019
Alignment:
Q  154 tgttggaaacattaaaagtaaattagaatttggatagttagaaatgatagaaaagtgttttgttgtgccgtggtcaaaactactgctctgaaagcaaatt 253  Q
    ||||||||| |||| || |||| |||||||  ||||||||| ||| |||  |||| | |||||||||| ||||  ||| | |||||||||||||||||||    
T  25079921 tgttggaaatattacaattaaaatagaattgagatagttaggaataata--aaagagatttgttgtgcagtggcaaaagccactgctctgaaagcaaatt 25080018  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 2472017 - 2471952
Alignment:
Q  79 gagaaatacttgctaggggacgaacccaaatctaaaagatttagacacatttacataattgatgtt 144  Q
    ||||||| |||||| ||| || ||| ||||| |||||| |||||||||||| ||| ||||||||||    
T  2472017 gagaaatgcttgcttgggaacaaactcaaatttaaaaggtttagacacattcacacaattgatgtt 2471952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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