View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_24 (Length: 473)
Name: NF17265_low_24
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 73 - 473
Target Start/End: Original strand, 1673517 - 1673918
Alignment:
| Q |
73 |
aatagtatcggagtcctagttcgacttgatggaaaagcaggggaagcgggaacttggctttagaagtttatagacgccacatctataatttattatgttg |
172 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1673517 |
aataatatcagagtcctagttcgacttgatggaaaagcaggggaagcgggaacttggctttagaagtttatagacgccacatctataatttattatgttg |
1673616 |
T |
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| Q |
173 |
gttttgggacaggtgttttatctaaccttgaaagtttaaattagagatgtgagatgtccatgttattcttgtttttgtttttatacgttttgtatttact |
272 |
Q |
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| T |
1673617 |
gttttgggacaggtgttttatctaaccttgaaagtttaaattagagatgtgagatgtccatgttattcttgtttttgtttttatacgttttgtatttact |
1673716 |
T |
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| Q |
273 |
taattaat-nnnnnnntggaacatagaagaagatgcatcatgtaaccgcttcatgaatagacaatccgcaaacattgcattccaaatccatgttgtgttg |
371 |
Q |
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| T |
1673717 |
taattaataaaaaaaatggaacatagaagaagatgcatcatgtaaccgcttcatgaatagacaatccgcaaacattgcattccaaatccatgttgtgttg |
1673816 |
T |
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| Q |
372 |
agttggccttatcttgtcatctttgctcaccgtcttcattttccatattcaaatccatctgaatacataatgcaaaattaaaaattaccaaaaatacttt |
471 |
Q |
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| T |
1673817 |
agttggccttatcttgtcatctttgctcaccgtcttcattttccatattcatatccatctgaatacataatgcaaaattaaaaattaccaaaaatacttt |
1673916 |
T |
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| Q |
472 |
tt |
473 |
Q |
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| T |
1673917 |
tt |
1673918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 1673394 - 1673448
Alignment:
| Q |
16 |
aagaatatgtcagtacatcaagaatattagagaggaagatgtcatatcttcacct |
70 |
Q |
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| T |
1673394 |
aagaatatgtcaatacatcaagaatattagagaggaagatgtaatatcttcacct |
1673448 |
T |
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