View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_26 (Length: 452)
Name: NF17265_low_26
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 31039911 - 31040357
Alignment:
| Q |
19 |
ttatcgacttcaatttagttgtaccattcatcattcccttgtaattctagtaannnnnnnctaaggttttttcggcttaatccttctttcgtgtattatg |
118 |
Q |
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| T |
31039911 |
ttatcgacttcaatttagttgtaccattcatcattcccttgtaattctagtaatttttttctaaggtttttccggcttaatccttctttcgtgtattatg |
31040010 |
T |
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| Q |
119 |
atttttgcatcaagtggttgatttaaactctatataagaacatttgcacatatcatagctacat---------------attatctttcaaaacaat--- |
200 |
Q |
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| T |
31040011 |
atttttgcatcaagtggttgatttaaactctatataagaacatttgcacatatcatagctacatgtacaacaactacatattatctttcaaaacaatata |
31040110 |
T |
|
| Q |
201 |
--gggatacaaaacaaaattcaaacaaaggattgtgttaaattgaaagatttaaatcattattcacaagttcgtgtcttggtaaaagcatgtaaatggta |
298 |
Q |
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| T |
31040111 |
atgggatacaaaacaaaattcaaataaaggattgtgttaaattgaaagatttaaatcattattcacaagttcgtgtcttggtaaaagcatgtaaatggta |
31040210 |
T |
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| Q |
299 |
ataaaatagtagtttatagtatattattatgtacgtgtcttggtcttgatctcagttctaaatccacaatcaaaaagataaacaagttttgcttacaata |
398 |
Q |
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| T |
31040211 |
ataaaatagtagtttatagtatattattatgtacgtgtcttggtcttgatctcagttctaaatccacaatc-aaaagataaacaagttttgcttacaata |
31040309 |
T |
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| Q |
399 |
aaacctgccataaataatctattaacacgttcaatttagaataattta |
446 |
Q |
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| T |
31040310 |
aaacctgccataaataatctattaacacgttcaatttagaataattta |
31040357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 86 - 316
Target Start/End: Complemental strand, 31091971 - 31091740
Alignment:
| Q |
86 |
tttttcggcttaatccttctttcgtgtattatgatttttgcatcaagtggttgatttaaactctatataagaacatttgcacatatcatagctacatatt |
185 |
Q |
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| T |
31091971 |
tttttgggcttattccttctttcgtgcattatgatttttgcatcaagtggttgatttaaactctatataagaacatttgcacatatcatagctacatatt |
31091872 |
T |
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| Q |
186 |
atctttcaaaacaatgggatacaaaac-aaaattcaaacaaaggattgtgttaaattgaaagatttaaatcattattcacaagttcgtgtcttggtaaaa |
284 |
Q |
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| T |
31091871 |
atctttcaaaacaatgggatacaaaacaaaaattcaaacaaaggattgtgttaaattgaaagatttaaatcattattcacaagttcgtgtcttggtaaaa |
31091772 |
T |
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| Q |
285 |
gcatgtaaatggtaataaaatagtagtttata |
316 |
Q |
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| T |
31091771 |
gcatgtaaatggtaataaaatagtagtttata |
31091740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 31075722 - 31075786
Alignment:
| Q |
190 |
ttcaaaacaatgggatacaaaacaaaattcaaacaaaggattgtgttaaattgaaagatttaaat |
254 |
Q |
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| T |
31075722 |
ttcaaaacaatgggatacaaaacaaaattcaaactaaggattgtgttaacttgaaagatctaaat |
31075786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 446
Target Start/End: Original strand, 31076206 - 31076296
Alignment:
| Q |
355 |
tctaaatccacaatcaaaaagataaacaagttttgcttacaataaaacctgccataaataatctattaacacgttcaatttagaataattta |
446 |
Q |
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| T |
31076206 |
tctaaatccactatcaaaa-gctaaagaagttttgcttaaaataaaacatgctataaataaccaattaacaagttcaatttggaataattta |
31076296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 31075692 - 31075724
Alignment:
| Q |
22 |
tcgacttcaatttagttgtaccattcatcattc |
54 |
Q |
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| T |
31075692 |
tcgacttcaatttagttgtaccattcatcattc |
31075724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 442
Target Start/End: Original strand, 31072461 - 31072532
Alignment:
| Q |
371 |
aaaagataaacaagttttgcttacaataaaacctgccataaataatctattaacacgttcaatttagaataa |
442 |
Q |
| |
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| T |
31072461 |
aaaagataaacaagttatgcttaaaataaaatttgcaatagctaatctattaacatgttcattttggaataa |
31072532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 446
Target Start/End: Original strand, 31073907 - 31073977
Alignment:
| Q |
376 |
ataaacaagttttgcttacaataaaacctgccataaataatctattaacacgttcaatttagaataattta |
446 |
Q |
| |
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|||||||| || |||||| |||| ||| |||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
31073907 |
ataaacaacttatgcttaaaatataacttgccataactaatctattaacacgttagttttggaataattta |
31073977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 33559641 - 33559716
Alignment:
| Q |
371 |
aaaagataaacaagttttgcttacaataaaacctgccataaataatctattaacacgttcaatttagaataattta |
446 |
Q |
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|||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||| ||| |||||||||| |
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| T |
33559641 |
aaaagataaacaagttatgcttaaaataaaatttgccatagctaatctattaacacgttcattttggaataattta |
33559716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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