View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_28 (Length: 420)
Name: NF17265_low_28
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 15323663 - 15323326
Alignment:
| Q |
18 |
ttaacctaaatcatttattagaagttccaacaacaaactccaagagtccttggtttttcccttccactatagcaaatgatcttggaagcatttgatcatt |
117 |
Q |
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| T |
15323663 |
ttaacctaaatcatttattagaggttccaagaacaaactccaagagtccttggtttt-cccttccactatagcaaatggtcttggaagcatttgatcatt |
15323565 |
T |
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| Q |
118 |
aaggtctcttccaataacagctaaaatcagcccactgtggtagcgtttgaggaaacactcatccatcgagttcaataatgggtctgcacttatatgtaag |
217 |
Q |
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| T |
15323564 |
aaggtctcttccaataacagctaaaatcagcccaccatggtagcgtttgaggaaacacccatccatcgagttcaataatggatctgcacttaaatgtacg |
15323465 |
T |
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| Q |
218 |
attttaggagttatgaaggaaacacacaaattaattaagcgaccaaatgtctaatttaactttaaattatggtttagaattctcataatttgaaccagta |
317 |
Q |
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| T |
15323464 |
attttaggagttatgaaggaaacacacaaattaattaagcgaccaaatgtctaatttaactttaaattatggtttagaattctcataatttgaaccagta |
15323365 |
T |
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| Q |
318 |
ccatcctt-ggttgtttgcctttcaagtttgtccaatcc |
355 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
15323364 |
ccatccttaggttgtttgcctttcaagtttgtccaatcc |
15323326 |
T |
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