View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_31 (Length: 411)
Name: NF17265_low_31
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_31 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 7938492 - 7938116
Alignment:
| Q |
16 |
atatactaaagaatttgagatgttgatgttgaaatgaaatattcaagaaatggaaaagcaaaaaattgcttgatatcttggaggattgaatactaaaatt |
115 |
Q |
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| T |
7938492 |
atatactaaagaatttgagatgttgatgttgaaatgaaatattcaagaaatggaaaagcaaaaaattgcttgatatcttggagggttgaatactaaactt |
7938393 |
T |
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| Q |
116 |
tatcaccaagtacaactcttgagaatattcgtccatggatgatgttgttcatttgaaaattaagg-ttgagaaacaannnnnnngaaaatattcatacca |
214 |
Q |
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| T |
7938392 |
tatcacctattacatctcttgagaatattcgtccatggatgatgttgttcatttgaaaattagggtttgagaaac-agttttttgaaaatattgatacca |
7938294 |
T |
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| Q |
215 |
acctctctcctccaaaacatttcatatcaactctcacaaaacaccaatcaataaacatgtttcctcattcaaatcccaatataatacaattaaagagaaa |
314 |
Q |
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| T |
7938293 |
acctctttcctccaacacatttcatatcaactctcataaaacaccaatcgataaacatgtttcctcattcaaatcccaatatagtacaattaaagagaaa |
7938194 |
T |
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| Q |
315 |
tatcacgacacataaatgtttcatgcatgtgtcaacggtatggatgcataacattatgttgtcggaatcgtaaagtcattat |
396 |
Q |
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| T |
7938193 |
tatcaagacacataaatgttt----cttgtgtcaacggtatggatgcataacattatgttgtctgaatcgtaaagccattat |
7938116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 37208859 - 37208942
Alignment:
| Q |
16 |
atatactaaagaatttgagatgttgatgttgaaatgaaatattcaagaaatggaaaagcaaaaaattgcttgatatcttggagg |
99 |
Q |
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| T |
37208859 |
atatactagagaatttgagaagttgatgatgaaatgtgatatccaagaaaaggaagagcaaacaattgctcgataccttggagg |
37208942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 11851379 - 11851314
Alignment:
| Q |
274 |
tttcctcattcaaatcccaatataatacaat--taaagagaaatatcacgacacataaatgtttca |
337 |
Q |
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| T |
11851379 |
tttcctcattcaaaccccaatataatacattcatagagagaaataccaagacacctaaatgtttca |
11851314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 89309 - 89392
Alignment:
| Q |
16 |
atatactaaagaatttgagatgttgatgttgaaatgaaatattcaagaaatggaaaagcaaaaaattgcttgatatcttggagg |
99 |
Q |
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| T |
89309 |
atatactagagaatttgagaagttgatgatgaaatgtgatatccaagaaaaggaagagcaaacgattgctcgataccttggagg |
89392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 45163142 - 45163225
Alignment:
| Q |
16 |
atatactaaagaatttgagatgttgatgttgaaatgaaatattcaagaaatggaaaagcaaaaaattgcttgatatcttggagg |
99 |
Q |
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|||||||| ||||||||||| ||||||| ||||||| |||| ||||||| |||| |||||| |||||| |||| |||||||| |
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| T |
45163142 |
atatactagagaatttgagaagttgatgatgaaatgtgatatccaagaaaaggaagagcaaacgattgctcgataccttggagg |
45163225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 2409129 - 2409055
Alignment:
| Q |
16 |
atatactaaagaatttgagatgttgatgttgaaatgaaatattcaagaaatggaaaagcaaaaaattgcttgata |
90 |
Q |
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| T |
2409129 |
atatactagagaatttgagaagttgatgatgaaatgtgatatccaagaaaaggaagagcaaacgattgctcgata |
2409055 |
T |
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