View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_32 (Length: 408)
Name: NF17265_low_32
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 38997143 - 38996786
Alignment:
| Q |
8 |
aagcaaaggcaaaaactaaagatagacataaacagaaacctaaataacaatatacatatgcaaagcacaacatagtataacagtataacaaccaaattaa |
107 |
Q |
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| T |
38997143 |
aagcagaggcaaaaactaaagatagacataaacagaaacctaaataacaatatacatatgcaaagcacaacatagtataacagtataacaaccaaattaa |
38997044 |
T |
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| Q |
108 |
aacacagaataattttcaaccacagttagagaaaaattattaaatttatcaaaacacaaataacccaccctaagacccaaacaagtcatcaattttatag |
207 |
Q |
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| T |
38997043 |
aacacagaataattttaaaccatagttagagaaaaattattaaatttatcaaaacacaaataacccaccctaaaacccaaacaagtcatcaattttataa |
38996944 |
T |
|
| Q |
208 |
caaccaaaatcaaacagaaattcaaagcctctgtgaaaatcatgccgnnnnnnnaatgattaatgttagtaacaagttgttagattaatatttactcatt |
307 |
Q |
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| T |
38996943 |
caaccaaaatcaaacagaaattcaaagcctctgtgaaaatcatgccgtttttttaatgattaatgttagtaacaagttgttagattaatatttactcatt |
38996844 |
T |
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| Q |
308 |
cattcggattttaatccggcaccttaaactccttatctcttataggaaaatgatgtcg |
365 |
Q |
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| T |
38996843 |
cgttcggattttaatccggcaccttaaactccttatctcttataggaaaatgatgtcg |
38996786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 5805207 - 5805175
Alignment:
| Q |
269 |
aatgttagtaacaagttgttagattaatattta |
301 |
Q |
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| T |
5805207 |
aatgttagtaataagttgttagattaatattta |
5805175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 313
Target Start/End: Original strand, 33257208 - 33257239
Alignment:
| Q |
282 |
agttgttagattaatatttactcattcattcg |
313 |
Q |
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| T |
33257208 |
agttgttagattaatatttactcattcattcg |
33257239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 3004849 - 3004890
Alignment:
| Q |
269 |
aatgttagtaacaagttgttagattaatatttactcattcat |
310 |
Q |
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| T |
3004849 |
aatgttagtaattagttgttagattaatatttgctcattcat |
3004890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 10799303 - 10799262
Alignment:
| Q |
269 |
aatgttagtaacaagttgttagattaatatttactcattcat |
310 |
Q |
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| T |
10799303 |
aatgttagtaattagttgttagattaatatttactccttcat |
10799262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 35753149 - 35753093
Alignment:
| Q |
262 |
aatgattaatgttagtaacaagttgttagattaatatttactcattcattcggattt |
318 |
Q |
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|||||| ||||||| ||| | |||||||||||||||||||| ||||||||||||| |
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| T |
35753149 |
aatgataaatgttattaattatttgttagattaatatttacttcttcattcggattt |
35753093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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