View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_33 (Length: 406)
Name: NF17265_low_33
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_33 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 251768 - 251381
Alignment:
| Q |
10 |
atatgaatccattccttcatccaaaagttgccaaactaagccacctgcaaatgtccctccattttgtgccaaactatatatacttgaataaactgtattc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||| || || || || ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
251768 |
atatgaatccattccttcatccaaaagttgccaaaccaatcccccggcgaatgtccctccattttgcgccaaactatatatacttgaataaactgtattc |
251669 |
T |
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| Q |
110 |
atgaatgaatctcttgcttcgatactataccccgagtcattcttcgacatcccaaattctgtaaacaccaatggttttttcaagattgttctggaatctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
251668 |
atgaatgaatctcttgcttcgatactataccccgagtcattcttcgacatcccaaattctgtaaacaccaatggttttttcaagatggttctggaatctt |
251569 |
T |
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| Q |
210 |
gcaaatgactcgtgatccatctttgcataaattccatttgcatggtgtcattttgtccggctaacctgtttatatatgaattgcttgttaaaatattcat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251568 |
gcaaatgactcgtgatccatctttgcataaattccatttgcatggtgtcattttgtccggctaacctgtttatatatgaattgcttgttaaaatattcat |
251469 |
T |
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| Q |
310 |
gataaaaggacctttaaatgcatttgaccgcgaaaatgaaagcaaaatatacctaccaattatcaggatatgcgtggattgttccgaa |
397 |
Q |
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| T |
251468 |
gattaaaggacctttagatgcatttgaccgcgaaaatgaaagcaaaatatacctaccaattatcaggatatgcatggattgttccgaa |
251381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 14565607 - 14565994
Alignment:
| Q |
10 |
atatgaatccattccttcatccaaaagttgccaaactaagccacctgcaaatgtccctccattttgtgccaaactatatatacttgaataaactgtattc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||| || || || || ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14565607 |
atatgaatccattccttcatccaaaagttgccaaaccaatcccccggcgaatgtccctccattttgcgccaaactatatatacttgaataaactgtattc |
14565706 |
T |
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| Q |
110 |
atgaatgaatctcttgcttcgatactataccccgagtcattcttcgacatcccaaattctgtaaacaccaatggttttttcaagattgttctggaatctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14565707 |
atgaatgaatctcttgcttcgatactataccccgagtcattcttcgacatcccaaattctgtaaacaccaatggttttttcaagatggttctggaatctt |
14565806 |
T |
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| Q |
210 |
gcaaatgactcgtgatccatctttgcataaattccatttgcatggtgtcattttgtccggctaacctgtttatatatgaattgcttgttaaaatattcat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14565807 |
gcaaatgactcgtgatccatctttgcataaattccatttgcatggtgtcattttgtccggctaacctgtttatatatgaattgcttgttaaaatattcat |
14565906 |
T |
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| Q |
310 |
gataaaaggacctttaaatgcatttgaccgcgaaaatgaaagcaaaatatacctaccaattatcaggatatgcgtggattgttccgaa |
397 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14565907 |
gattaaaggacctttagatgcatttgaccgcgaaaatgaaagcaaaatatacctaccaattatcaggatatgcatggattgttccgaa |
14565994 |
T |
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