View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_35 (Length: 393)
Name: NF17265_low_35
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 220 - 380
Target Start/End: Complemental strand, 13752672 - 13752512
Alignment:
| Q |
220 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacgacccaatggcg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13752672 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagaggacccaatggcg |
13752573 |
T |
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| Q |
320 |
gctgcgagagtttatctacactgacctgaccttccattctctgccatcccttgaaattctt |
380 |
Q |
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| T |
13752572 |
gccgcgagagtatatctacactgacctgaccttccattctctgccatcccttgaaattctt |
13752512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 220 - 380
Target Start/End: Complemental strand, 6116270 - 6116110
Alignment:
| Q |
220 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacgacccaatggcg |
319 |
Q |
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| T |
6116270 |
gattcacacaactgcaattcctcaacatttggaaaagtaggcaagtcagtcaactctgggcatttgttgattattagttgagagagacgacccaatggcg |
6116171 |
T |
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| Q |
320 |
gctgcgagagtttatctacactgacctgaccttccattctctgccatcccttgaaattctt |
380 |
Q |
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| T |
6116170 |
ggtgcgagagtttatctacactgacctgacgtttcattctctgccatcccgtgaaattctt |
6116110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13753554 - 13753408
Alignment:
| Q |
1 |
aaattacgatggaaaaaatggagcttaggggactaagccaatacccaaagtaacaacattgtgcaataacaacaactacctcattaaaaaccttgccata |
100 |
Q |
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| T |
13753554 |
aaattacgatggaaaaaatggagcttaggggactaagtcaatacccaaagtaacaagattgtgcaataacaacaactacctcattaaaaaccttgccata |
13753455 |
T |
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| Q |
101 |
aaagtatggtataggaaaaaagagtgtagtgcaaagaaacaacagtt |
147 |
Q |
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| T |
13753454 |
aaagtatggtataggaaaaaagaatgtagtgcaaagaaacaacagtt |
13753408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 220 - 380
Target Start/End: Original strand, 6123168 - 6123328
Alignment:
| Q |
220 |
gattcacacaactgcaattcttcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacgacccaatggcg |
319 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
6123168 |
gattcacacaactgcaattcctcaacatttggaaaagtaggcaagtcagtcaactttgggcatttgttgattattagttgagagagacggacgaatggcc |
6123267 |
T |
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| Q |
320 |
gctgcgagagtttatctacactgacctgaccttccattctctgccatcccttgaaattctt |
380 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
6123268 |
gctgcgagtgtttatctacactgacctgaccttccgttctcttccatcccttgaaattctt |
6123328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 13753234 - 13753143
Alignment:
| Q |
130 |
tgcaaagaaacaacagttaaattcataaagaaagcaacacaacataaacaatacaatccttgaaaatatgagagcagtagaaacgcatacga |
221 |
Q |
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| T |
13753234 |
tgcaaagaaacaacagttaaattcataaagaaagcaacacaacataaacaatacaatccttgaaaataggagagcagtagaaacgcatacga |
13753143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 6117515 - 6117411
Alignment:
| Q |
39 |
caatacccaaagtaacaacattgtgcaataacaacaactacctcattaaaaaccttgccataaaagtatggtataggaaaaaagagtgtagtgcaaagaa |
138 |
Q |
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| T |
6117515 |
caatacccaaagtaacaatattgtacaagaacatcaactacctcgttaaaaaccttaccataaaa-tatggtataggaaaaaagagtgtagtgcaaagaa |
6117417 |
T |
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| Q |
139 |
acaaca |
144 |
Q |
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|||||| |
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| T |
6117416 |
acaaca |
6117411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 6117412 - 6117359
Alignment:
| Q |
164 |
caacacaacataaacaatacaatccttgaaaatatgagagcagtagaaacgcat |
217 |
Q |
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||||||||||||||| | ||||||| |||||||||||||||| ||||||||||| |
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| T |
6117412 |
caacacaacataaactacacaatccctgaaaatatgagagcaatagaaacgcat |
6117359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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