View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_40 (Length: 360)
Name: NF17265_low_40
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 44628644 - 44628410
Alignment:
| Q |
18 |
catgcaaatctaattatatttacattgaggtacttattattaatttgattatttttgcaatacagaacctcatcaagtgaaaattttggaacttggtcgg |
117 |
Q |
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| T |
44628644 |
catgcaaatctaattatatttacattgaggtacttattattaatttgattatttttgcaatacacaacctcatcaagtgaaaattttggaacttggtcgg |
44628545 |
T |
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| Q |
118 |
tggctaaaacttaaaagtatagtaaaccattaacttgagtactgtttcaactttcaaccaatactccaacaaacaaacaaaaaatattcatcaaaaatgc |
217 |
Q |
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| T |
44628544 |
tggctaaaacttaaaagtatagtaaaccaataacttgagtactgtttcaactttcaaccaatactccaacaaacaaacaaaaaatattcaac-aaaatgc |
44628446 |
T |
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| Q |
218 |
attgaaaggttggagtttgataaaattgatgtgtta |
253 |
Q |
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| T |
44628445 |
attgaaaggttggagttcgataaaattgatgtgtta |
44628410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 44628383 - 44628317
Alignment:
| Q |
282 |
ataaccatattatttctggcaagtattcacattaagacttaagttgatctcacctctcaagtatatt |
348 |
Q |
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| T |
44628383 |
ataaccatattatttccggcaagtattcacattaagacttaagttgatctcacctctcaagtatatt |
44628317 |
T |
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