View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_41 (Length: 353)
Name: NF17265_low_41
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 14790526 - 14790191
Alignment:
| Q |
1 |
ttattttaccaacaaagttaggtnnnnnnngacaaagagaattacatctgaatccatcatgtggtgttgttgttttcatttgcttaacaacattcttagg |
100 |
Q |
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| T |
14790526 |
ttattttaccaacaaagttaggtaaaaaaagacaaagagaattacatttgaatccatcatgtggtgttgttgttttcatttgcttaacaacattcttagg |
14790427 |
T |
|
| Q |
101 |
gctttccttaacatgttcttgttttgtgaaagtaccataatgccactcccatttttctagctcttttgtacttagtttagtcaaccattgatcaaaatca |
200 |
Q |
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| T |
14790426 |
gctttccttaacatgttcttgttttgtgaaagtaccataatgccactcccatttttctagctcttttgtacttagtttagtcaaccattgatcaaaatca |
14790327 |
T |
|
| Q |
201 |
aattcctctaatgaagcactttctcttccatcaccacatgatttgctcttcccaaaacgggcttcttggagaagatcttgaagtgtggtggtcacattat |
300 |
Q |
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| T |
14790326 |
aattcctctaaggaagcactttctcttccatcaccacatgatttgctcttcccaaaacgggcttcttggagaagatcttgaagtgtggtggtcacattat |
14790227 |
T |
|
| Q |
301 |
tagtagattcttgacattctgtttccgggctcccag |
336 |
Q |
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||||||||| | |||||| ||||||| ||||||||| |
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| T |
14790226 |
tagtagattttagacattgtgtttccaggctcccag |
14790191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 39739165 - 39739123
Alignment:
| Q |
197 |
atcaaattcctctaatgaagcactttctcttccatcaccacat |
239 |
Q |
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| T |
39739165 |
atcaaattcctctaaggaagcactttctcttccatcaccacat |
39739123 |
T |
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