View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17265_low_42 (Length: 347)
Name: NF17265_low_42
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_42 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 31009203 - 31008886
Alignment:
| Q |
18 |
ggaacaaggaagaataagaagaggtggaggcatttgtggaggtgatgaaaatttaaaagcatctaatgatagaattagaagatgaaattatgttaggcct |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009203 |
ggaacaatgaagaataagaagaggtggaggcatttgtggaggtgatgaaaatttaaaagcatctaatgatagaattagaagatgaaattatgttaggcct |
31009104 |
T |
|
| Q |
118 |
tcttgaggaggcaaattatcaaaatatgacaacgtcctatatataaaagtcaaaagaaaatgatatatataagtataacaacttgtttgttatcttaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009103 |
tcttgaggaggcaaattatcaaaatatgacaacgtcctatatataaaagtcaaaagaaaatgatatatataagtataacaacttgtttgttatcttaata |
31009004 |
T |
|
| Q |
218 |
aaaattaatttgactcaatacatctttgaatgagatcgagatgacaagttaacactaataatttgaatttgtcgcaatgttaaaaactcttatatgagag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31009003 |
aaaattaatttgactcaatacatctttgaatgagatcgagatgacaagttaacactaataatttgaatttgtcgcaatgttaaaaactcttatatgagag |
31008904 |
T |
|
| Q |
318 |
ttttcacgttgatggttc |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31008903 |
ttttcacgttgatggttc |
31008886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University