View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_43 (Length: 337)
Name: NF17265_low_43
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 25608043 - 25608353
Alignment:
| Q |
15 |
tatcaaacagatttaaaggtaaaaaagtttttgaaatataaaacatttaccaaacaactttatttttcattcattgnnnnnnncactaannnnnnnnnna |
114 |
Q |
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| T |
25608043 |
tatcaaacagatttaaacgtaaaaaagtttttgaaatataaaacatttaccaaacaactttatttttcattcattgaaaaaaacactaatttttttt--a |
25608140 |
T |
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| Q |
115 |
aagctcttaatttttaagtttagacttaaaacaact---acggtaannnnnnnnng--gagtaaaacaatacaaaccaatgtttgtttctacattagctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25608141 |
aagctcttaatttttaagtttagacttaaaacaacttctacggtaattttttttttttgagtaaaacaatacaaaccaatgtttgtttctacattagctt |
25608240 |
T |
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| Q |
210 |
ttaaaataatgcgacaaacacaattcaatgtgagaagctccaatttattgtggtgagtggacgtgttgtgagatcatttccaccatgaaaacaaatgtat |
309 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25608241 |
ttaaaataatgcgacaaacacaattcaatgcgagatgctccaatttattgtggtgagtggacgtgttgtgagatcatttccaccatgaaaacaaatgtat |
25608340 |
T |
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| Q |
310 |
tataagttatcct |
322 |
Q |
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||||||||||||| |
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| T |
25608341 |
tataagttatcct |
25608353 |
T |
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