View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_low_59 (Length: 264)

Name: NF17265_low_59
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_low_59
NF17265_low_59
[»] chr2 (1 HSPs)
chr2 (1-157)||(3537421-3537578)
[»] chr3 (3 HSPs)
chr3 (158-235)||(38639900-38639977)
chr3 (155-216)||(36433065-36433126)
chr3 (157-202)||(29438249-29438294)
[»] chr8 (3 HSPs)
chr8 (161-235)||(8789527-8789601)
chr8 (157-240)||(21519279-21519362)
chr8 (162-202)||(27084504-27084544)
[»] chr4 (3 HSPs)
chr4 (157-240)||(54028833-54028916)
chr4 (162-202)||(29096101-29096141)
chr4 (162-202)||(37987239-37987279)
[»] chr5 (6 HSPs)
chr5 (157-231)||(9991661-9991735)
chr5 (158-211)||(34731551-34731604)
chr5 (158-216)||(36560502-36560560)
chr5 (162-203)||(15974189-15974230)
chr5 (162-202)||(18768414-18768454)
chr5 (162-202)||(28866480-28866520)
[»] scaffold0006 (1 HSPs)
scaffold0006 (158-216)||(148325-148383)
[»] chr1 (1 HSPs)
chr1 (158-216)||(13658564-13658622)
[»] chr6 (2 HSPs)
chr6 (158-231)||(33582512-33582585)
chr6 (158-202)||(14533475-14533519)
[»] chr7 (2 HSPs)
chr7 (158-202)||(19362396-19362440)
chr7 (177-216)||(28756127-28756166)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 3537578 - 3537421
Alignment:
Q  1 atgttcacggttaattagttgttctgccacttattacatctctaataatctcgcacataacaacaactgcagaaccgttcaaatttaattaaccaattta 100  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  3537578 atgttcacggttaattagttgttccgtcacttattacatctctaataatctcgcacataacaacaactgcaaaacagttcaaatttaattaaccaattta 3537479  T
Q  101 aaacggttttgcaacagttgc-atgtgctacatgcatcgatagagggattcaaacatg 157  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  3537478 aaacggttttgcaactgttacaatgtgctacatgcatcgatagagggattcaaacatg 3537421  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 38639900 - 38639977
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38639900 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaa 38639977  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 36433126 - 36433065
Alignment:
Q  155 atgcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 216  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||| |||||| |||||||||    
T  36433126 atgcaggggcagatcttctcaagggcaggcaggtgccatggcatcacctgaatttactatat 36433065  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 29438249 - 29438294
Alignment:
Q  157 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||    
T  29438249 gcaggggcggatctctttgggggcaggcaggtgccatggtatcccc 29438294  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 8789527 - 8789601
Alignment:
Q  161 gggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaa 235  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  8789527 gggcggatctcttcaggggcaggcaagtgccatgacatcccctgaagttactatatatacactattatgcttaaa 8789601  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 21519279 - 21519362
Alignment:
Q  157 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatac 240  Q
    ||||||||||||||  ||| || |||||||| | ||||||||||||  || ||||||||| || | |||||| |||||||||||    
T  21519279 gcaggggcggatcttctcaaggacaggcaggggtcatggcatcccccaaatttactatatgtatagtattatacctaaacatac 21519362  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 27084544 - 27084504
Alignment:
Q  162 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    ||||||||||||  |||| ||||||||||||||||||||||    
T  27084544 ggcggatctctttgggggaaggcaggtgccatggcatcccc 27084504  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 54028833 - 54028916
Alignment:
Q  157 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatac 240  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||   ||||||||||| |||| ||||||||||||||| ||||    
T  54028833 gcaggggcggatctcttcaagggcagacaggtgccatgacatccttcgaagttactatttatatactattatgcctaaatatac 54028916  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 29096101 - 29096141
Alignment:
Q  162 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  29096101 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 29096141  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 37987279 - 37987239
Alignment:
Q  162 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  37987279 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 37987239  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 9991661 - 9991735
Alignment:
Q  157 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcc 231  Q
    ||||||||||||||  ||  ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  9991661 gcaggggcggatcttctctagggcaggcaagtgccatggcatcccctgaatttactatatatacagtattatgcc 9991735  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 34731551 - 34731604
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttac 211  Q
    |||||||||||||||||||||||| |||||||||| | |||||||| |||||||    
T  34731551 caggggcggatctcttcaggggcatgcaggtgccaggacatcccctaaagttac 34731604  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 36560502 - 36560560
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 216  Q
    ||||||| |||||  ||| |||||| |||||| |||||||||||||||| |||||||||    
T  36560502 caggggcagatcttctcaagggcagacaggtgtcatggcatcccctgaatttactatat 36560560  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 15974230 - 15974189
Alignment:
Q  162 ggcggatctcttcaggggcaggcaggtgccatggcatcccct 203  Q
    |||||||||  | |||||||||||||||||||||||||||||    
T  15974230 ggcggatcttctaaggggcaggcaggtgccatggcatcccct 15974189  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 18768454 - 18768414
Alignment:
Q  162 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  18768454 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 18768414  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 28866520 - 28866480
Alignment:
Q  162 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  28866520 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 28866480  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 148383 - 148325
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 216  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||    
T  148383 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatat 148325  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 13658622 - 13658564
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 216  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||    
T  13658622 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatat 13658564  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 33582512 - 33582585
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcc 231  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||| || ||||||||| || | |||||||||    
T  33582512 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctaaacttactatatttatagtattatgcc 33582585  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 14533475 - 14533519
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  14533475 caggggcggatctctttgggggcaggcaggtgccatggtatcccc 14533519  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 19362396 - 19362440
Alignment:
Q  158 caggggcggatctcttcaggggcaggcaggtgccatggcatcccc 202  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  19362396 caggggcggatctctttgggggcaggcaggtgccatggtatcccc 19362440  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 28756166 - 28756127
Alignment:
Q  177 gggcaggcaggtgccatggcatcccctgaagttactatat 216  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  28756166 gggcaggcaggtgccatggcatcccttgaatttactatat 28756127  T

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