View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_6 (Length: 635)
Name: NF17265_low_6
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 137 - 619
Target Start/End: Original strand, 41902519 - 41903014
Alignment:
| Q |
137 |
tattttttatttggtagtgcacactctcaaactgataaaatccnnnnnnntattcagcaaactatagag-------------atagcctttatctccata |
223 |
Q |
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| T |
41902519 |
tattttttatttggtagtacacactctcaaactgataaaatccaaaaaaatattcagcaaactatagagtacattgaaaaaaatagcctttatctccata |
41902618 |
T |
|
| Q |
224 |
gnnnnnnnntaatcaatttaatagtctaaactgatttgcttattgnnnnnnncaccatcatcatcactatcttatgctgcataaggtctcttgttgattg |
323 |
Q |
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| T |
41902619 |
gaaaaaaaataatcaatttaatagtctaaactgatttgcttattgtttttttcaccatcatcatcactatcttatgcggtataaggtctcttgttgattg |
41902718 |
T |
|
| Q |
324 |
ataattaagctccaccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41902719 |
ataattaagctccaccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaat |
41902818 |
T |
|
| Q |
424 |
gtttgcaccagcacctttgaagagagattttggaccttcagttttcacaatttgtgagaaagcatccaaagaactcttgtactttacagcttcacctgat |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41902819 |
gtttgcaccagcacctttgaagagagattttggaccttcagttttcacaatttgtgagaaagcatccaaagaactcttgtactttacagcttcacctgat |
41902918 |
T |
|
| Q |
524 |
gtcatcatcattcttctacgaactgtgtctaaagggtaagatgcaacactagcaccaaccgtaacagcccatcctagggcaaagctagctaggaaa |
619 |
Q |
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| T |
41902919 |
gtcatcatcattcttctacgaactgtgtctaaagggtaagatgcaacactagcaccaaccgtaacagcccatcctagggcaaagctagctaggaaa |
41903014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 41902315 - 41902451
Alignment:
| Q |
1 |
atttctgttaatagtcgttttagttaaattgtgagggttggtcaattttgtactcaaattttgtgaactatgttatgcaaatttgtaacaatggatagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
41902315 |
atttctgttaatagtcgttttagttaaattgtgagggttggtcaattttgtactcaaattttgtgaactaagttatgtaaatttgtaacaatggatagaa |
41902414 |
T |
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| Q |
101 |
aaataatgctagcatatcatataatctaacacactct |
137 |
Q |
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| T |
41902415 |
aaataatgctagcatatcatataatctaacacactct |
41902451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 30345258 - 30345370
Alignment:
| Q |
338 |
ccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaatgtttgcaccagcac |
437 |
Q |
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||||||||| |||||||||| |||| | || |||||| || ||||||| ||||||||||||||||| || ||||| || | |||||||||||||||| |
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| T |
30345258 |
ccagaaccatatttctttccaaacaagaccagctgcagcttgtcataaccagcaagcacaccagcacctgcaactgcacgcaatatgtttgcaccagcac |
30345357 |
T |
|
| Q |
438 |
ctttgaagagaga |
450 |
Q |
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||||||| ||||| |
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| T |
30345358 |
ctttgaaaagaga |
30345370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 567
Target Start/End: Complemental strand, 9142952 - 9142709
Alignment:
| Q |
324 |
ataattaagctccaccagaaccaaatttctttcccaacataagcacctgcagtttatcataacttgcaagcacaccagcaccagctactgctcgaagaat |
423 |
Q |
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|||||||||| |||||||| || ||||||| || |||| ||| ||||||| || || |||| | |||||||||||||||||| || || || || || |
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| T |
9142952 |
ataattaagcaccaccagatccgtatttcttgccgaacacaagaacctgcaacttgtcgtaaccagaaagcacaccagcaccagcaacagcacggaggat |
9142853 |
T |
|
| Q |
424 |
gtttgcaccagcacctttgaagagagattttggaccttcagttttcacaatttgtgagaaagcatccaaagaactcttgtactttacagcttcacctgat |
523 |
Q |
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||| |||||||| || ||||| | || || | ||| ||| | || | |||||| ||| ||||| || |||||||||||||| |||||||| || || |
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| T |
9142852 |
gttagcaccagctcccttgaacaatgacttagcaccctcattcttgaggatttgttggaatgcatcaaaggaactcttgtacttgacagcttctccggag |
9142753 |
T |
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| Q |
524 |
gtcatcatcattcttctacgaactgtgtctaaagggtaagatgc |
567 |
Q |
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| T |
9142752 |
gtcatcatcattcttctcctaacagtgtcaatagggtatgatgc |
9142709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 567
Target Start/End: Complemental strand, 13561746 - 13561676
Alignment:
| Q |
497 |
ctcttgtactttacagcttcacctgatgtcatcatcattcttctacgaactgtgtctaaagggtaagatgc |
567 |
Q |
| |
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||||||||||| |||||||| || |||||||||||||||||||| | ||||||||| | ||||||||||| |
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| T |
13561746 |
ctcttgtacttgacagcttctccagatgtcatcatcattcttctcctaactgtgtcaattgggtaagatgc |
13561676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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