View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_65 (Length: 250)
Name: NF17265_low_65
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_65 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 46767811 - 46768053
Alignment:
| Q |
13 |
aaaattgcacaaacaaaaagtattccacatgcnnnnnnnctacacacaacacatatttttgttaatttatttttccacatattcgttgcatacttgcaag |
112 |
Q |
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| T |
46767811 |
aaaattgcacaaacaaaaagtattccacatgcaaaaaaactacacacaacacatatttttgttaatttatttttccacatattcgttgcatagttgcaag |
46767910 |
T |
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| Q |
113 |
ctgcatgagatatattttttgagttaaattacttgcatgagatctttattaccagttattagtgatctaaaacaagtaaaactctaacatactattagtc |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46767911 |
ctgcatgagatatattttttgagttaaa---cttgcatgagatctttattaccagttattagtgatctaaaacaagtaaaactctaacatactattagtc |
46768007 |
T |
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| Q |
213 |
caacaagagtac--------gtacgaggaaacgaaacctaggactg |
250 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
46768008 |
caacaagagtacgtacgtacgtacgaggaaacgaaacctaggactg |
46768053 |
T |
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