View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_68 (Length: 246)
Name: NF17265_low_68
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6146056 - 6146300
Alignment:
| Q |
1 |
ttttagaaaatgatacaacatgattggatgagatacttacttcaccaaactcattaaaagagtattacctaagagaacatggaagagatgataagagtct |
100 |
Q |
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| T |
6146056 |
ttttagaaaatgatacaacatgattagatgagatacctgcttcaccaaacttattaaaagagtattacccaagagaacatggaagagatgataagagtct |
6146155 |
T |
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| Q |
101 |
-ttccgacctaaccacatatca---nnnnnnnnnnnnnngaaagaaaggtggtcttaaatctcttaagggagaattttaatgtctattatagtcctattt |
196 |
Q |
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| T |
6146156 |
cttccgacctaaccacatatcattttattttatttttttgaaagaaaggtggtcttaaatctcttaagggagaattttaatgtctatgatagtcctattt |
6146255 |
T |
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| Q |
197 |
gactttagaagaattcatcgctgcatttatccatggagaataatct |
242 |
Q |
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||| |||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
6146256 |
gac-ttagaagaattcatcgctgcatgtatacatggaaaataatct |
6146300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 6180344 - 6180389
Alignment:
| Q |
7 |
aaaatgatacaacatgattggatgagatacttacttcaccaaactc |
52 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6180344 |
aaaatgatataacatgattggatgagatacttacttcaccaaactc |
6180389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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