View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_70 (Length: 243)
Name: NF17265_low_70
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38996642 - 38996415
Alignment:
| Q |
1 |
caatccggtttttaaaacaatgtctttaatatcagaatattttgggtgcattttgataaataaaaagaacaaatttatagagatacttacgcttttgatg |
100 |
Q |
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| T |
38996642 |
caatccggtttttaaaacaatgtctttaatatcagaatattttgggtgcattttgataaataaaaagaacaaatttatagagatacttacgcttttgatg |
38996543 |
T |
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| Q |
101 |
ctgcataaattgtgacaagaggaaaagaaggaagtacaacactggaaccagaaccaatgttaataatagctccttttcttttcttaatcatactaggaag |
200 |
Q |
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| T |
38996542 |
ctgcataaattgtgacaagaggaaaagaaggaagtacaacactggaaccagaaccaatgttaataatagctccttttctcttcttaatcatactaggaag |
38996443 |
T |
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| Q |
201 |
cacagcttttgtaatccaagttgttcct |
228 |
Q |
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| T |
38996442 |
cacagcttttgtaatccaagttgttcct |
38996415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 39001227 - 39001046
Alignment:
| Q |
47 |
tgcattttgataaataaaaagaacaaatttatagagata-cttacgcttttgatgctgcataaattgtgacaagaggaaaagaaggaagtacaacactgg |
145 |
Q |
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|||||||||||||||||||| | || |||||||||| | ||||||||||||| |||||||||| ||||||||||||| | ||||||| |||||| ||| |
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| T |
39001227 |
tgcattttgataaataaaaaca-cacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtgg |
39001129 |
T |
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| Q |
146 |
aaccagaaccaatgttaataatagctccttttcttttcttaatcatactaggaagcacagcttttgtaatccaagttgttcct |
228 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39001128 |
aaccagaaccaatgttaataatagctccttttttgttcttaatcatactaggaagcacagctttagtaatccaagttgttcct |
39001046 |
T |
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