View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_71 (Length: 243)
Name: NF17265_low_71
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 835923 - 836022
Alignment:
| Q |
46 |
agagcaatatcgataacttcttattggttatgtttgaggttgaccatatactttattagatttctatatctactgaattcatagactaatccttggagag |
145 |
Q |
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| T |
835923 |
agagcaatatcgataacttcttgttggttatgtttgaggttgaccatatactttattagatttttatatttactgaattcatagactaatccttggagag |
836022 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 836064 - 836129
Alignment:
| Q |
163 |
acaaaatccttggagagaatgttgaatatcaaaacttattttctttgatagataaatattcattac |
228 |
Q |
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| T |
836064 |
acaaaatccttggagagaatgttgaatatcaaaacttattttctttgatagataaatattcattac |
836129 |
T |
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