View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_72 (Length: 243)
Name: NF17265_low_72
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 34957295 - 34957089
Alignment:
| Q |
41 |
ttcctgaatttcctataacaaaccaattcatgaaaacaacctaccaacggacgatgaagcaatagcggaaccacatccaaaggtcttaaagcaagcttca |
140 |
Q |
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| T |
34957295 |
ttcctgaatttcctataacaaaccaattcatgaaaacaacctaccaacggacgatgaagcaatagtggaaccacatccaaaggtcttaaagcaagcttca |
34957196 |
T |
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| Q |
141 |
acgattttcccattctcattgaccttaatatgaagcttcataacat------caccacaagcgggtgcaccaacaagaccagttcccacatccggattat |
234 |
Q |
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| T |
34957195 |
acgattttcccattctcaacgaccttaatatgaagcttcataacatcaccttcaccacaagcgggtgcaccaacaagaccaattcccacatccggattat |
34957096 |
T |
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| Q |
235 |
tcttatc |
241 |
Q |
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||||||| |
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| T |
34957095 |
tcttatc |
34957089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 34944543 - 34944414
Alignment:
| Q |
78 |
aacctaccaacggacgatgaagcaatagcggaaccacatccaaaggtcttaaagcaagcttcaacgattttcccattctcattgaccttaatatgaagct |
177 |
Q |
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| T |
34944543 |
aacctaccaacggaggatgaagcaatggcggaaccacatccaaaggtcttaaagcaagcttcaacgattttcccattctcatcgaccttaatctgaaggt |
34944444 |
T |
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| Q |
178 |
tcataacatcaccacaagcgggtgcaccaa |
207 |
Q |
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| T |
34944443 |
tcataacatcaccacaagcgggtgcaccaa |
34944414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 34953336 - 34953192
Alignment:
| Q |
79 |
acctaccaacggacgatgaagcaatagcggaaccacatccaaaggtcttaaagcaagcttcaacgattttcccattctcattgaccttaatatgaagctt |
178 |
Q |
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|||||||||| || ||||||||||| ||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||| ||||| || |||||||| |
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| T |
34953336 |
acctaccaacagaagatgaagcaatggcggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaaccttgatttgaagctt |
34953237 |
T |
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| Q |
179 |
cataacatcaccacaagcgggtgcaccaacaagaccagttcccac |
223 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34953236 |
catgacatcaccacaagcgggtgcaccaacaagaccagttcccac |
34953192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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