View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_8 (Length: 607)
Name: NF17265_low_8
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_8 |
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| [»] scaffold0455 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 44688402 - 44688070
Alignment:
| Q |
20 |
atggcgggtatcagacccttgtgaaatggtcggtatggtccgttctttgttgctactgtcaatgataaagttggttcctacttcctaaatgcacgacgtc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44688402 |
atggcgggtatcagacccttgtgaaatggtcggtatggtccgttctttgttgctactgtcaatgataaagttggttccta-------aatgcacgacgtc |
44688310 |
T |
|
| Q |
120 |
agacaatttgttgaagtcaagcacgtaaggaagtcataaggagaaggtgagaattgtggacggagtgggtggaagagttgtgtttctccgcgtgagtttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688309 |
agacaatttgttgaagtcaagcacgtaaggaagtcataaggagaagatgagaattgtggacggagtgggtggaagagttgtgtttctccgcgtgagtttt |
44688210 |
T |
|
| Q |
220 |
tggtaattctaatcaaccaaggacggagggggatttcttgttcttgttgttgtgctggtggtggtttgatgaggaagaggacgtgtttagagagggttct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44688209 |
tggtaattctaatcaaccaaggacggagggggatttcttgttcttgttgttgtgctggtggtggtttgatgaggaagaggacgtgtttagagagggatct |
44688110 |
T |
|
| Q |
320 |
cgtggaaaaacttggtaatttgaagggtataatctgatgg |
359 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
44688109 |
cgtggaaaaacttggtaatttgaagggtaaaatctgatgg |
44688070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 358 - 592
Target Start/End: Complemental strand, 44688047 - 44687813
Alignment:
| Q |
358 |
ggcgccacatggaacaaaccgatggaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcagttggaagttcagacca |
457 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688047 |
ggcgccacatggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcagttggaagttcagacca |
44687948 |
T |
|
| Q |
458 |
atctacctccgccatggaagcttctattctcttcttttccatcgtacaaacaaaaaaccctagcagagaatctgctctactgttgaaattcggtgtcatt |
557 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44687947 |
atctacctctgccatggaagcttctatcctcttcttttccatcgtaaaaacaaaaaaccctagcagagaatctgctctactgttgaaattcggtgtcatt |
44687848 |
T |
|
| Q |
558 |
cacaccaaatatttaaacgctttaagtgggccttt |
592 |
Q |
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|||| |||| ||||||||||||||||||||||||| |
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| T |
44687847 |
cacaacaaacatttaaacgctttaagtgggccttt |
44687813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 358 - 563
Target Start/End: Complemental strand, 44679964 - 44679764
Alignment:
| Q |
358 |
ggcgccacatggaacaaaccgatggaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcagttggaagttcagacca |
457 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44679964 |
ggcgccacatggaacaaaccgatcgaaagctaatgagatcgagatctttagcgaatagttgcgatatcagattgacaagatcatttggaagttcagacca |
44679865 |
T |
|
| Q |
458 |
atctacctccgccatggaagcttctattctcttcttttccatcgtacaaacaaaaaaccctagcagagaatctgctctactgttgaaattcggtgtcatt |
557 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
44679864 |
atctacctccgccatggaagctgctattctcttcttttccatagta-----aaaaaaccctaacagagaaactgctctactgttgaaatttggtgtcatt |
44679770 |
T |
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| Q |
558 |
cacacc |
563 |
Q |
| |
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|||||| |
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| T |
44679769 |
cacacc |
44679764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 44680077 - 44679985
Alignment:
| Q |
269 |
ttgtgctggtggtggtttgatgaggaagaggacgtgtttagagagggttctcgtggaaaaacttggtaatttgaagggtataatctgatggcg |
361 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||||||||| | || ||| ||||| ||| ||||||||||||| |||||||||||| |
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| T |
44680077 |
ttgtggtggtggtggtttgatgaggaagaggatgtgtttagagagggatttcatggtaaaacgtggcaatttgaagggtaaaatctgatggcg |
44679985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 41986249 - 41986396
Alignment:
| Q |
101 |
ttcctaaatgcacgacgtcagacaatttgttgaagtcaagcacgtaaggaag-tcataaggagaaggtgagaattgtggacggagtgggtggaagagttg |
199 |
Q |
| |
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|||| ||||| ||||| | ||| |||||||||||||||||||||||||||| |||||||| |||| | ||| |||||||| ||||||||||| |
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| T |
41986249 |
ttcccaaatggacgacatgagagaatttgttgaagtcaagcacgtaaggaaaatcataagggcaaggatactcacatgggcggagtggatggaagagttg |
41986348 |
T |
|
| Q |
200 |
tgtttctccgcgtgagtttttggtaattctaatcaaccaaggacggag |
247 |
Q |
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|||||| || | ||| |||| |||||||||||||||||| |||||||| |
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| T |
41986349 |
tgtttccccacatgaattttgggtaattctaatcaaccagggacggag |
41986396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 9344707 - 9344815
Alignment:
| Q |
367 |
tggaacaaaccgatggaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctc |
466 |
Q |
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|||||||||| ||| |||||| ||||||||| || || || |||| |||||||||| ||||||| |||||| |||| ||||||||||||||| | || |
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| T |
9344707 |
tggaacaaacagatcgaaagcgaatgagatcaagttcattgtcgaggcgttgcgatataagattgagaagatcctttgggagttcagaccaatctgcatc |
9344806 |
T |
|
| Q |
467 |
cgccatgga |
475 |
Q |
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|||||||| |
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| T |
9344807 |
tgccatgga |
9344815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 18991878 - 18991947
Alignment:
| Q |
180 |
cggagtgggtggaagagttgtgtttctccgcgtgagtttttggtaattctaatcaaccaaggacggaggg |
249 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||||||| | |||||| ||||||||||||||||||| |
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|
| T |
18991878 |
cggagcgggtggaagagttgagtttctcggcatgagtttttcgcaattctgatcaaccaaggacggaggg |
18991947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 464
Target Start/End: Complemental strand, 250617 - 250561
Alignment:
| Q |
408 |
tcgaatagttgcgatatcagattgacaagatcagttggaagttcagaccaatctacc |
464 |
Q |
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||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| |
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| T |
250617 |
tcgaatagttgcgatatcagattcaaaaggtcgtttggaagttcagaccaatctacc |
250561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 10890 - 10832
Alignment:
| Q |
415 |
gttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgccatg |
473 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||||||||| |||| |||||| |
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|
| T |
10890 |
gttgagatatcagattgagaagatcctttggaagttgagaccaatctgcctctgccatg |
10832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 20351 - 20293
Alignment:
| Q |
415 |
gttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgccatg |
473 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||||||||| |||| |||||| |
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|
| T |
20351 |
gttgtgatatcagattgagaagatcctttggaagttgagaccaatctgcctctgccatg |
20293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 20494 - 20576
Alignment:
| Q |
389 |
aatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgcca |
471 |
Q |
| |
|
|||||||||||| || || |||| | |||| ||||||||||||| |||||| ||||||| | |||||||||| |||| |||| |
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|
| T |
20494 |
aatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcctttggaagctgagaccaatctgcctctgcca |
20576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 28132984 - 28132926
Alignment:
| Q |
415 |
gttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgccatg |
473 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||||||||| |||| |||||| |
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|
| T |
28132984 |
gttgagatatcagattgagaagatcctttggaagttgagaccaatctgcctctgccatg |
28132926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 28177229 - 28177311
Alignment:
| Q |
389 |
aatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgcca |
471 |
Q |
| |
|
|||||||||||| || || |||| | |||| ||||||||||||| |||||| ||||||| | |||||||||| |||| |||| |
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| T |
28177229 |
aatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcctttggaagctgagaccaatctgcctctgcca |
28177311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 28219853 - 28219795
Alignment:
| Q |
415 |
gttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgccatg |
473 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||||||||| |||| |||||| |
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|
| T |
28219853 |
gttgtgatatcagattgagaagatcctttggaagttgagaccaatctgcctctgccatg |
28219795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 28219996 - 28220078
Alignment:
| Q |
389 |
aatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgcca |
471 |
Q |
| |
|
|||||||||||| || || |||| | |||| ||||||||||||| |||||| ||||||| | |||||||||| |||| |||| |
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| T |
28219996 |
aatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcctttggaagctgagaccaatctgcctctgcca |
28220078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 7026662 - 7026722
Alignment:
| Q |
415 |
gttgcgatatcagattgacaagatcagttggaagttcagaccaatctacctccgccatgga |
475 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| |||| ||||||||| ||| ||||||||| |
|
|
| T |
7026662 |
gttgcgatatcagattgagaagctccgttgggagtttagaccaatcaaccgtcgccatgga |
7026722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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