View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_82 (Length: 222)
Name: NF17265_low_82
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_82 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 27096457 - 27096265
Alignment:
| Q |
14 |
cacagacccaagaggccaagaccataacaattgactaagaaatcacacatgactaagatgcattttaagaagacattgttgtgggtttgtccaccaattt |
113 |
Q |
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| T |
27096457 |
cacacacccaagaggccaagaccataacaattgactaagaaatcacacatgactaagatgcattttaagaagacattgttgtgggtttgtccaccaattt |
27096358 |
T |
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| Q |
114 |
aatgattgaagttatatcaaaatgacactaaaatattcttttggcttcacataaggtacatgtaaaccacataattggtggaaatgaacaact |
206 |
Q |
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| T |
27096357 |
aatgattgaagttatatcaaaatgacactaaaatattcttttggcttcacataaggtacatgtaaaccacataattggtggaaatgaacaact |
27096265 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 38927636 - 38927694
Alignment:
| Q |
53 |
aaatcacacatgactaagatgcattttaagaagacattgttgtgggtttgtccaccaat |
111 |
Q |
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| T |
38927636 |
aaatcacacatgaatatgatgcattttaccacgacattgtagtgggtttctccaccaat |
38927694 |
T |
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