View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17266_high_10 (Length: 341)
Name: NF17266_high_10
Description: NF17266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17266_high_10 |
 | |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 11780465 - 11780124
Alignment:
| Q |
1 |
gttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |
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|
| T |
11780465 |
gttgttacttctcatatgacggtccctatgcccaggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtg |
11780366 |
T |
|
| Q |
101 |
aggaactgctactaactacgccagtgtttgaaattgtttcccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcggg |
199 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11780365 |
aggagctgctactagctacgccagtgtttgaaattgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcggg |
11780266 |
T |
|
| Q |
200 |
aggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaa |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11780265 |
aggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccgaa |
11780166 |
T |
|
| Q |
300 |
gggtgcccatgagcatgtaccacattcatcaattgttgagca |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11780165 |
gggtgcccatgagcatgtaccacattcatcaattgttgagca |
11780124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtgg |
256 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||||||||||| ||||||||| || || || ||||| || ||||| || |||||||||| |
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|
| T |
10424765 |
gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg |
10424666 |
T |
|
| Q |
257 |
aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc |
329 |
Q |
| |
|
|| |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| ||||||||||||||| |
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|
| T |
10424665 |
aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc |
10424593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 1624920 - 1624838
Alignment:
| Q |
247 |
gatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc |
329 |
Q |
| |
|
|||||||||||||| ||| |||| |||| | ||| ||||| |||||||| |||||| |||| |||| ||||||||||||||| |
|
|
| T |
1624920 |
gatgatgtggaacacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc |
1624838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
| Q |
246 |
ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc |
305 |
Q |
| |
|
||||| |||||||||| ||||| | |||||||||| |||||||||||||| |||||||| |
|
|
| T |
30731478 |
ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc |
30731537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 17158884 - 17158540
Alignment:
| Q |
1 |
gttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtg |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
17158884 |
gttgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtg |
17158785 |
T |
|
| Q |
101 |
aggaactgctactaactacgccagtgtttgaaattgtttcccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatcgc |
196 |
Q |
| |
|
| | |||| ||| |||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
17158784 |
aaaagctgccactcgctacgccagtgtttgaaattgtttcctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatcgc |
17158685 |
T |
|
| Q |
197 |
gggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtcc |
296 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| | || ||||||||||||||||| ||||||||||||| ||| || | ||||||||||||| |
|
|
| T |
17158684 |
gggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagtcc |
17158585 |
T |
|
| Q |
297 |
gaagggtgcccatgagcatgtaccacattcatcaattgttgagca |
341 |
Q |
| |
|
||||| | |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
17158584 |
caagggggaccatgagcatgtactacattcatcaattgttaagca |
17158540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 6 - 341
Target Start/End: Original strand, 14977470 - 14977808
Alignment:
| Q |
6 |
tacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggaa |
105 |
Q |
| |
|
||||||||| |||| ||||||| |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| | |||||||||||| | |
|
|
| T |
14977470 |
tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag |
14977569 |
T |
|
| Q |
106 |
ctgctactaactacgccagtgtttgaaattgtttcccg-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggagg |
202 |
Q |
| |
|
||| | | |||| |||||| |||| |||| |||| ||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14977570 |
ttgccagaagctacaccagtgattgagtttgtgtccccagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggagg |
14977669 |
T |
|
| Q |
203 |
agttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaaggg |
302 |
Q |
| |
|
|| || ||| | ||||||||||||||| | ||||| || ||||||||||||||||||||||| ||| | ||| |||||||||||||| ||||| |
|
|
| T |
14977670 |
aggtgcagatcccaacggttgacgatgttactgctacgctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaaggg |
14977769 |
T |
|
| Q |
303 |
tgcccatgagcatgtaccacattcatcaattgttgagca |
341 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
14977770 |
ttcccatgagcatgttccacattcatccattgtttagca |
14977808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 11776482 - 11776309
Alignment:
| Q |
43 |
ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggaactgctactaactacgccagtgtttgaaattgtttccc |
142 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||||| | ||||||||| |||||| |||||| ||| || ||| |||||||| || ||||||||| |
|
|
| T |
11776482 |
ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc |
11776383 |
T |
|
| Q |
143 |
g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaac |
213 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
11776382 |
ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaac |
11776309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 9352477 - 9352422
Alignment:
| Q |
158 |
tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaac |
213 |
Q |
| |
|
||||||||||||||||||| |||| || || ||||||||| |||| |||||||||| |
|
|
| T |
9352477 |
tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaac |
9352422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 24353686 - 24353639
Alignment:
| Q |
166 |
gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaac |
213 |
Q |
| |
|
||||||| | |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
24353686 |
gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaac |
24353639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 26 - 341
Target Start/End: Original strand, 12101751 - 12102064
Alignment:
| Q |
26 |
ctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggaactgctactaactacgccagt |
125 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||||| || | || | | || | ||| |
|
|
| T |
12101751 |
ctatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagt |
12101850 |
T |
|
| Q |
126 |
gtttgaaattgtttcccggtt---gcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagtt |
222 |
Q |
| |
|
|||||||||| |||||| | ||| ||||| |||||| ||||||||| |||||| | ||| |||||||||||||||||||||||||| | | | |
|
|
| T |
12101851 |
gtttgaaattatttccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggct |
12101950 |
T |
|
| Q |
223 |
gacgatgttactccaacgctctcggatgatgtggaacata----atcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgta |
318 |
Q |
| |
|
|||||||||||| | | | |||||||||||| ||||||||||||| | ||| |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
12101951 |
gacgatgttactacgatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgta |
12102041 |
T |
|
| Q |
319 |
ccacattcatcaattgttgagca |
341 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12102042 |
ccacattcatcaattgttgagca |
12102064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 329
Target Start/End: Complemental strand, 5782080 - 5781902
Alignment:
| Q |
151 |
gatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatg |
250 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||| | || || ||||||||| || || || |||| |
|
|
| T |
5782080 |
gatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttacactttctgatg |
5781981 |
T |
|
| Q |
251 |
atgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc |
329 |
Q |
| |
|
|||||||||| ||||||||| ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| |||||| |
|
|
| T |
5781980 |
atgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatc |
5781902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 329
Target Start/End: Complemental strand, 19069709 - 19069420
Alignment:
| Q |
43 |
ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggaactgctactaactacgccagtgtttgaaattgtttccc |
142 |
Q |
| |
|
|||||||||| ||||||||||||||| | || || | ||||||||| |||||| | |||| |||| || ||||||||||||| || || |||||| |
|
|
| T |
19069709 |
ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc |
19069610 |
T |
|
| Q |
143 |
g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaac |
239 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||| || || ||||||||| || |
|
|
| T |
19069609 |
ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac |
19069510 |
T |
|
| Q |
240 |
gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc |
329 |
Q |
| |
|
|| || ||||||||||||| ||||||||| ||| ||||| |||||||||||||| |||||| |||||||| | || |||||||||| |
|
|
| T |
19069509 |
cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc |
19069420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 17763963 - 17764060
Alignment:
| Q |
220 |
gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgt |
317 |
Q |
| |
|
||||| ||||||||| | ||||| || |||||||||||||||||||||| || | ||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
17763963 |
gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgt |
17764060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 11724701 - 11724757
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaac |
213 |
Q |
| |
|
||||||||| |||||| ||||| | ||||| |||||||||||||| |||||||||| |
|
|
| T |
11724701 |
gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaac |
11724757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtgg |
256 |
Q |
| |
|
||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||| || || || ||||| || ||||| || |||||||||| |
|
|
| T |
16311632 |
gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg |
16311731 |
T |
|
| Q |
257 |
aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat |
324 |
Q |
| |
|
|| |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| ||||| |
|
|
| T |
16311732 |
aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat |
16311799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtgg |
256 |
Q |
| |
|
||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||| || || || ||||| || ||||| || |||||||||| |
|
|
| T |
18488416 |
gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg |
18488515 |
T |
|
| Q |
257 |
aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat |
324 |
Q |
| |
|
|| |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| ||||| |
|
|
| T |
18488516 |
aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat |
18488583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtgg |
256 |
Q |
| |
|
||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||| || || || ||||| || ||||| || |||||||||| |
|
|
| T |
18492626 |
gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg |
18492725 |
T |
|
| Q |
257 |
aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat |
324 |
Q |
| |
|
|| |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| ||||| |
|
|
| T |
18492726 |
aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat |
18492793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 309
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
| Q |
146 |
tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctc |
245 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||| ||| ||||||||||| || || || |
|
|
| T |
19829181 |
tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc |
19829082 |
T |
|
| Q |
246 |
ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat |
309 |
Q |
| |
|
|||||||||||||| ||||||||| ||| | ||| |||||||||||||| |||||| ||||| |
|
|
| T |
19829081 |
tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat |
19829018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 295
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtgg |
256 |
Q |
| |
|
||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||| || || || ||||| || ||||| || |||||||||| |
|
|
| T |
16314023 |
gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg |
16314122 |
T |
|
| Q |
257 |
aacataatcattcgcgcccacaggatctggtggagagtc |
295 |
Q |
| |
|
|| |||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
16314123 |
aatataatcgttcgcgcccacgggagctggtggagagtc |
16314161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 295
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtgg |
256 |
Q |
| |
|
||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||| || || || ||||| || ||||| || |||||||||| |
|
|
| T |
18495017 |
gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg |
18495116 |
T |
|
| Q |
257 |
aacataatcattcgcgcccacaggatctggtggagagtc |
295 |
Q |
| |
|
|| |||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
18495117 |
aatataatcgttcgcgcccacgggagctggtggagagtc |
18495155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 313
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
| Q |
157 |
gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaactatgtagttgacgatgttactccaacgctctcggatgatgtgg |
256 |
Q |
| |
|
|||||||| ||||||| ||||| | |||||||||||||||||| ||||||||||| |||| |||||||| ||| ||||| || ||||||||| |
|
|
| T |
17459431 |
gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg |
17459530 |
T |
|
| Q |
257 |
aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc |
313 |
Q |
| |
|
|||| ||||||||| |||| | ||| |||||||||||| || ||| ||||||||| |
|
|
| T |
17459531 |
aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc |
17459587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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