View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17267_low_4 (Length: 332)
Name: NF17267_low_4
Description: NF17267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17267_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 47 - 311
Target Start/End: Complemental strand, 47561202 - 47560939
Alignment:
| Q |
47 |
accatcaccaagctttaacactttctgaaatttaatgattcttgattcttgaatccctaatttcacatttttccccaaaattgaatgatctcatattcat |
146 |
Q |
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| T |
47561202 |
accaccaccaagctttaacactttctgaaatttaatgattcttgattcttgaatccttaatttgacatttt-ccccaaaattgaatgat-tcatattcat |
47561105 |
T |
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| Q |
147 |
ctttattattcaaaattttcataaaccaattcacaattgatggttctgcaattagtttcatcttaaccttacacagaccctttttatg-ttatcaattaa |
245 |
Q |
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| T |
47561104 |
ctttattattcaaaattttcataaaccaattcataattgatggttctacaattagtttcatcttaacctcacacaaaccctttttatgattatcaattaa |
47561005 |
T |
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| Q |
246 |
tttttattgattttcatctgacagagaaacatagaggttttgggtttttgagatcttcactaccca |
311 |
Q |
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| T |
47561004 |
tttttattgattttcatctgacagagaaacatggaggttatgggtttttgagatcttcactaccca |
47560939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 38406807 - 38406933
Alignment:
| Q |
159 |
aaattttcataaaccaattcacaattgatggttctgcaattagtttcatcttaaccttacacagaccctttttatg-ttatcaattaatttttattgatt |
257 |
Q |
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|||||| |||||||||||||| |||||||||||| |||||| ||||||||| |||| || ||||||||||| ||| ||||||||||||||||||||||| |
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| T |
38406807 |
aaatttccataaaccaattcataattgatggttccacaattaatttcatcttgacctcacgcagacccttttcatggttatcaattaatttttattgatt |
38406906 |
T |
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| Q |
258 |
ttcatctgacagagaaacatagaggtt |
284 |
Q |
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| T |
38406907 |
ttcatctaacagagaaacatggaggtt |
38406933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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