View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17267_low_5 (Length: 227)

Name: NF17267_low_5
Description: NF17267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17267_low_5
NF17267_low_5
[»] chr4 (17 HSPs)
chr4 (7-227)||(7766038-7766258)
chr4 (7-221)||(7786866-7787080)
chr4 (7-142)||(7878828-7878963)
chr4 (9-142)||(7790525-7790658)
chr4 (7-142)||(7771840-7771975)
chr4 (7-122)||(7779410-7779525)
chr4 (7-87)||(7773267-7773347)
chr4 (32-140)||(48903399-48903507)
chr4 (52-142)||(7237269-7237359)
chr4 (7-142)||(7908747-7908882)
chr4 (95-142)||(7773394-7773441)
chr4 (17-140)||(7905010-7905133)
chr4 (28-111)||(48147221-48147304)
chr4 (41-120)||(48871027-48871106)
chr4 (41-120)||(48876331-48876410)
chr4 (41-120)||(48886713-48886792)
chr4 (32-110)||(45365726-45365804)
[»] chr8 (1 HSPs)
chr8 (49-111)||(4030311-4030373)
[»] chr2 (1 HSPs)
chr2 (49-111)||(29350898-29350960)
[»] chr7 (1 HSPs)
chr7 (32-120)||(48884291-48884382)
[»] chr5 (2 HSPs)
chr5 (32-120)||(42561842-42561930)
chr5 (49-78)||(9120272-9120301)
[»] chr3 (1 HSPs)
chr3 (38-122)||(47451412-47451496)
[»] chr6 (1 HSPs)
chr6 (30-78)||(21979147-21979195)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 7766258 - 7766038
Alignment:
Q  7 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766258 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 7766159  T
Q  107 caccattttctgtagaatacatagggtgaaagtagtccacaaatctggaatagtacagagggtcaaattcatgatcaggaatggcattttgaggaagaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766158 caccattttctgtagaatacatagggtgaaagtagtccacaaatctggaatagtacagagggtcaaattcatgatcaggaatggcattttgaggaagaac 7766059  T
Q  207 aagtgtcttagtccatgacga 227  Q
    |||||||||||||||||||||    
T  7766058 aagtgtcttagtccatgacga 7766038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 7787080 - 7786866
Alignment:
Q  7 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7787080 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 7786981  T
Q  107 caccattttctgtagaatacatagggtgaaagtagtccacaaatctggaatagtacagagggtcaaattcatgatcaggaatggcattttgaggaagaac 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |  ||| |||||||| |||  |||||||||||    
T  7786980 caccattttctgtagaatacatagggtgaaagtagtccgcaaatctggaatagtacagagggttaaagtagtgaccaggaatgacatactgaggaagaac 7786881  T
Q  207 aagtgtcttagtcca 221  Q
    ||| |||||| ||||    
T  7786880 aagagtcttattcca 7786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 7878963 - 7878828
Alignment:
Q  7 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 106  Q
    ||||||||||||||||| || ||||||||| |||||| ||| ||||||||||| |||||||||||||||||| ||||||||  || | ||||||||||||    
T  7878963 acaacttcggatggactattacagaaggagcgatgccttaataactgtcctttatcattatacttcaccaatctagtaccatgatttcttccaataatat 7878864  T
Q  107 caccattttctgtagaatacatagggtgaaagtagt 142  Q
    ||||||||||||||||||| ||||| ||||||||||    
T  7878863 caccattttctgtagaatatataggttgaaagtagt 7878828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 7790658 - 7790525
Alignment:
Q  9 aacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatca 108  Q
    |||||| ||| ||||||| ||||||||| | || ||||| |  |||||||| |||||||||||||||||| ||||||||  || | ||||||||||||||    
T  7790658 aacttcagattgactgttacagaaggagcgctgtcctaatagttgtcctttatcattatacttcaccaatctagtaccatgatttcttccaataatatca 7790559  T
Q  109 ccattttctgtagaatacatagggtgaaagtagt 142  Q
    |||| || ||||||||| ||||| ||||||||||    
T  7790558 ccatattttgtagaatatataggttgaaagtagt 7790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 7771975 - 7771840
Alignment:
Q  7 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 106  Q
    |||| ||| ||| ||||||| ||||||||| | || ||||| |  |||||||| |||||||||||||||||| |||||| |  || | ||||||||||||    
T  7771975 acaatttcagattgactgttacagaaggagcgctgtcctaatagttgtcctttatcattatacttcaccaatctagtactaagatttcttccaataatat 7771876  T
Q  107 caccattttctgtagaatacatagggtgaaagtagt 142  Q
    ||||||||| ||||||||| ||||| ||||||||||    
T  7771875 caccattttttgtagaatatataggttgaaagtagt 7771840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 7779410 - 7779525
Alignment:
Q  7 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 106  Q
    ||||||||| ||||||| || ||||||||| |||||| ||| | ||||||||  |||||||||||||||||| ||||||||  || |  |||||||||||    
T  7779410 acaacttcgaatggactattacagaaggagcgatgccttaatagctgtccttcatcattatacttcaccaatctagtaccaagatttcctccaataatat 7779509  T
Q  107 caccattttctgtaga 122  Q
    ||||||||| ||||||    
T  7779510 caccattttttgtaga 7779525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 7773267 - 7773347
Alignment:
Q  7 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtacca 87  Q
    ||||||||||||||||| || ||||||| |||||||| ||| |||||||||| || |||||||||||||||| ||||||||    
T  7773267 acaacttcggatggactattacagaaggcgtgatgccttaataactgtccttggtaattatacttcaccaatctagtacca 7773347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 48903507 - 48903399
Alignment:
Q  32 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgtagaatacatagg 131  Q
    ||||||||| | |||  |||||||||||||||||||||||||||||| |||||||| | | | ||||||| || |||||||||| || |||| | || ||    
T  48903507 aggagtgatactctaggaactgtcctttgtcattatacttcaccaatctagtaccatcttttgttccaatgatgtcaccattttttgaagaacatattgg 48903408  T
Q  132 gtgaaagta 140  Q
    |||||||||    
T  48903407 gtgaaagta 48903399  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 7237269 - 7237359
Alignment:
Q  52 tgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 142  Q
    |||||||| |||||||||||||||||| ||||| ||  |  | ||||||||||||||||||||| |||||| |  ||||||||||||||||    
T  7237269 tgtcctttatcattatacttcaccaatctagtatcatgacttcttccaataatatcaccattttttgtagagtgtatagggtgaaagtagt 7237359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 7908882 - 7908747
Alignment:
Q  7 acaacttcggatggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatat 106  Q
    ||||||||||||||||| ||  |||||| | |||||| ||| | ||||||||| |||||||||||||||||| | | |  |  |  | ||||||||||||    
T  7908882 acaacttcggatggactattaaagaaggtgcgatgccttaatagctgtcctttatcattatacttcaccaatctggaattaagagttcttccaataatat 7908783  T
Q  107 caccattttctgtagaatacatagggtgaaagtagt 142  Q
    |||| |||| |||||| |  ||||||||||||||||    
T  7908782 caccgttttttgtagagtgtatagggtgaaagtagt 7908747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 7773394 - 7773441
Alignment:
Q  95 ttccaataatatcaccattttctgtagaatacatagggtgaaagtagt 142  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  7773394 ttccaataatatcaccattttttgtagaatatataggttgaaagtagt 7773441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 7905133 - 7905010
Alignment:
Q  17 atggactgttgcagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttc 116  Q
    ||||||| || |||| |||| |||||| ||| | ||| ||||  ||||||||||| |||||| || |||||  || |  ||| |||||||||||||| |     
T  7905133 atggactattacagatggagcgatgccttaatagctgcccttcatcattatactttaccaatctactaccaagatttcctccgataatatcaccattctt 7905034  T
Q  117 tgtagaatacatagggtgaaagta 140  Q
    |||||| |||||||||||||||||    
T  7905033 tgtagagtacatagggtgaaagta 7905010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 48147221 - 48147304
Alignment:
Q  28 cagaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacca 111  Q
    ||||| |||| |||| ||| || |||||||||||| |||||||||| ||||| |||  |||||| | |||||||||| ||||||    
T  48147221 cagaatgagttatgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcacca 48147304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 48871106 - 48871027
Alignment:
Q  41 gccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 120  Q
    ||||||| |||||||| ||||||| |||||||||||||  | |||||| || |  |||||||||||||||| ||| ||||    
T  48871106 gccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 48871027  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 48876410 - 48876331
Alignment:
Q  41 gccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 120  Q
    ||||||| |||||||| ||||||| |||||||||||||  | |||||| || |  |||||||||||||||| ||| ||||    
T  48876410 gccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 48876331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 48886792 - 48886713
Alignment:
Q  41 gccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 120  Q
    ||||||| |||||||| ||||||| |||||||||||||  | |||||| || |  |||||||||||||||| ||| ||||    
T  48886792 gccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 48886713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 45365726 - 45365804
Alignment:
Q  32 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacc 110  Q
    ||||| |||| ||||| ||||||||||  |||||||||||||||||| || ||  | ||| | ||||||||||||||||    
T  45365726 aggagcgatgtcctaacaactgtccttcatcattatacttcaccaatctattaagatcatctgttccaataatatcacc 45365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 4030311 - 4030373
Alignment:
Q  49 aactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacca 111  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||    
T  4030311 aactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcacca 4030373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 29350960 - 29350898
Alignment:
Q  49 aactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcacca 111  Q
    |||||||||||||||| |||||||||||||| |||||||||||   |||||||||||||||||    
T  29350960 aactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcacca 29350898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 48884382 - 48884291
Alignment:
Q  32 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatatt---ttccaataatatcaccattttctgta 120  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||| ||| || |||||  |   ||||||||||||||||| ||| ||||    
T  48884382 aggagtgatgccctaacaactgtcctttatcattatacttcatcaatctagcacgaccatgatctattccaataatatcaccactttttgta 48884291  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 42561842 - 42561930
Alignment:
Q  32 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 120  Q
    |||||| |||| ||| |||||  |||||||| ||||| |||||||||   |||||||||| | ||||||||||||||||||||| ||||    
T  42561842 aggagttatgctctagaaactcccctttgtcgttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgta 42561930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 9120301 - 9120272
Alignment:
Q  49 aactgtcctttgtcattatacttcaccaat 78  Q
    ||||||||||||||||||||||||||||||    
T  9120301 aactgtcctttgtcattatacttcaccaat 9120272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 47451412 - 47451496
Alignment:
Q  38 gatgccctaaaaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgtaga 122  Q
    ||||| |||| ||||||||||||||||||||||| ||||||   ||| || ||| | ||||||||||||||||| ||| ||||||    
T  47451412 gatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtaga 47451496  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 21979147 - 21979195
Alignment:
Q  30 gaaggagtgatgccctaaaaactgtcctttgtcattatacttcaccaat 78  Q
    |||| |||| |||||||| ||||||||||| ||||| ||||||||||||    
T  21979147 gaagtagtgctgccctaacaactgtcctttatcattgtacttcaccaat 21979195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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