View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17268_high_10 (Length: 344)
Name: NF17268_high_10
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_high_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 34145089 - 34144753
Alignment:
| Q |
8 |
cgagtgagaagaagaacagtacaatgtttcgcaatcaacaagtacaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaac |
107 |
Q |
| |
|
|||| ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34145089 |
cgagagagaataagaacagtgcaatggttcgcaatcaacaagtaaaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaac |
34144990 |
T |
|
| Q |
108 |
aaaatctacctcgcccaactctttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttcctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34144989 |
aaaatctacctcgcccaactctttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttcctt |
34144890 |
T |
|
| Q |
208 |
ttcagtgttgaaacaaaatgttaagaacatgcatgttacagatcttcttgcaaaatgtgaatctatttttgagtttgtatttatgatgatgctgcatatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34144889 |
ttcagtgttgaaacaaaatgttaagaacatgcatgttacagatcttcttgcaaaatgtgaatctgtttttgagtttgtatttatgatgatgctgcatatt |
34144790 |
T |
|
| Q |
308 |
tttaacatctttttaaactgactgcaggatcttcctt |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34144789 |
tttaacatctttttaaactgactgcaggatcttcctt |
34144753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University