View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_high_12 (Length: 296)
Name: NF17268_high_12
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 40084941 - 40084677
Alignment:
| Q |
15 |
cagagatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcagaaccaa |
114 |
Q |
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| T |
40084941 |
cagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcagaaccaa |
40084842 |
T |
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| Q |
115 |
cacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagggaaggaaagattggactttggttt |
214 |
Q |
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| T |
40084841 |
cacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagggaaggaaagattggactttggttt |
40084742 |
T |
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| Q |
215 |
ggtttggtttatttgttacatgtgnnnnnnnggtcacgtggatgtgaaatgtaagtgatgatgct |
279 |
Q |
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| T |
40084741 |
ggtttggtttatttgttacatgtgtttttttggtcacgtggatgtgaaatgtaagtgatgatgct |
40084677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 40077017 - 40076832
Alignment:
| Q |
15 |
cagagatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcagaaccaa |
114 |
Q |
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| T |
40077017 |
cagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgcaaaacatttttggtaggaaccaaagtagaaccaa |
40076918 |
T |
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| Q |
115 |
cacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagggaaggaaaga |
200 |
Q |
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| T |
40076917 |
cacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaagagagaaaaagaaactcactagtgaaggaaaga |
40076832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 40059003 - 40058795
Alignment:
| Q |
15 |
cagagatcaagactctacgtttaccatcaatgaccaatgctctatgatcataatccacattggtgcaaaacattgttggtaagaaccaaagcagaaccaa |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
40059003 |
cagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcataatccacattggtgcaaaacatttttggtaggaaccaaagtagaaccaa |
40058904 |
T |
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| Q |
115 |
cacaatttcagtggctctcatggtaattattctagaagaatgaatgatccaaaaagagaaaaagaaactcactagg----gaaggaaagattggactttg |
210 |
Q |
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| T |
40058903 |
cacaatttcaaaggctctcatggtaattattttggaagaatgaatgaaccaaaaatagagaaagaaactcactagggaaagaaggaatgaatgaactttg |
40058804 |
T |
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| Q |
211 |
gtttggttt |
219 |
Q |
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| T |
40058803 |
gtttggttt |
40058795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 40058766 - 40058733
Alignment:
| Q |
246 |
ggtcacgtggatgtgaaatgtaagtgatgatgct |
279 |
Q |
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| T |
40058766 |
ggtcacgtgggtgtgaaatgtaagtgatgatgct |
40058733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 22016649 - 22016683
Alignment:
| Q |
32 |
cgtttaccatcaatgaccaatgctctatgatcata |
66 |
Q |
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| T |
22016649 |
cgtttaccatcaatgaccaatgctctatgatcata |
22016683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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