View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_high_7 (Length: 389)
Name: NF17268_high_7
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 54881247 - 54880899
Alignment:
| Q |
11 |
cagagagaagaaacctgttatgtttctgtgtatgttcatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaa |
110 |
Q |
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| T |
54881247 |
cagagagaagaaacctgttatgtttctgtgtatgttgatttgctccatggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaa |
54881148 |
T |
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| Q |
111 |
tagatatccacgcctctcctgcaacnnnnnnncgcacgatattatttattattaattaattaaagaccattttaaaacgtggttagagttgtggttgcat |
210 |
Q |
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| T |
54881147 |
tagatatccacgcctctcctgcaacaaaaaa-cgcaagatattatt--------attaattaaagaccattttaaaacgtggttagagttgtggttgaat |
54881057 |
T |
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| Q |
211 |
tagtgacatctgactcatgagattctttaaaatattaaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttgga |
310 |
Q |
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| T |
54881056 |
tagtcacatctgactcatgagattctttaaaatattaaaagatccagatgcgacggtgtattcatacttgacagatatcacaaagagggtagtctttgga |
54880957 |
T |
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| Q |
311 |
gttgaggtgaacaagagaaaaacgagtgtgtttggttgcgagcttgttggcacggtgg |
368 |
Q |
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| T |
54880956 |
gttgaggtgaacaagagaaaaacgagtgtgtttggttgcgagcttgttggcacggtgg |
54880899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 26846622 - 26846544
Alignment:
| Q |
56 |
catggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaa |
134 |
Q |
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| T |
26846622 |
catggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaatagatatgcacgcctctcctgcaa |
26846544 |
T |
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