View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_high_9 (Length: 384)
Name: NF17268_high_9
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 23666086 - 23665741
Alignment:
| Q |
13 |
aatatgaattaattaggggtatattagaatcaatgtatttgaaagttcaataaaagtcttataaaaaggactgagaaattctttcaaaaaacttttatgt |
112 |
Q |
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| T |
23666086 |
aatatgaattaattaggggtatattagaatcaatgtatttgaaagttcaataaaagtcttataaaaaggactgagaaattctttcaaaaaacttttatgt |
23665987 |
T |
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| Q |
113 |
ttaaggacaaaaagggagttgtgtgttggtgagattttctttcagatgaaataatactttgcaaataatttgaaagttannnnnnnnaactttacaagtt |
212 |
Q |
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| T |
23665986 |
ttaacgacaaaaagggagttgtgtgttggtgaggttttctttcagaagaaataatactttgcaaataatttgaaagttattttttttaactttacaagtt |
23665887 |
T |
|
| Q |
213 |
tttagagaaaatagacttttacaatcttaaattcgattgaaagataaatcaaattttctttaaacgatctaaatttcttatcaattatcattgaactact |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23665886 |
tttagagaaaatagacttttacaatcttaaattcgattgaaagataaatcaaattttctttaaacgatctaaatttc-------ttatcattgaactact |
23665794 |
T |
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| Q |
313 |
tcattgttgataagtctatgagagtttaaattgccattgttttatgcgacttt |
365 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23665793 |
tcattgttgataagtctatgaaagtttaaattgccattgttttatgcgacttt |
23665741 |
T |
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