View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_low_1 (Length: 603)
Name: NF17268_low_1
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 15 - 589
Target Start/End: Original strand, 27771264 - 27771841
Alignment:
| Q |
15 |
agaatcatcttcatcttcattcatattcaacacatcaccaattgaaaaaccattttgaaatgaatgatccatagacactgaccttccgatcgattcacaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27771264 |
agaatcatcttcatcttcattcatattcaacacatcaccaattgaaaaaccattttgaaatgaatgatccatagacactgaccttccgatcgattcacaa |
27771363 |
T |
|
| Q |
115 |
acttcgtctctaatttcgattattctttctcttccttgcaaattacacaaatcactaaaagcgcgcaatgaaggcgcctttgaatcaactctactatgat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| | |
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| T |
27771364 |
acttcgtctctaatttcgattattctttctcttccttgcaaattacacaaatcactaaaagcgcgcaatgatggcgccttcgactcaactctactatgtt |
27771463 |
T |
|
| Q |
215 |
gaatcattgcttcttccataactatttgt---tcttctgaaaaagtttcagttcttgaaggaagttctataaccgtcgcgggaacttgaacattgtgtat |
311 |
Q |
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| T |
27771464 |
gcatcattgcttcttccacaactatttgttgctcttctaaaaaagtttcatttcttgaaggaagttctataattgtaaccggaacttgaacatgatgtgt |
27771563 |
T |
|
| Q |
312 |
tgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27771564 |
tgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacac |
27771663 |
T |
|
| Q |
412 |
attggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactnnnnnnngcatctccttttttgtagc |
511 |
Q |
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| T |
27771664 |
attggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactaaaaaaagcatctccttttttgtagc |
27771763 |
T |
|
| Q |
512 |
taaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttctt |
589 |
Q |
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|
| T |
27771764 |
taaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttctt |
27771841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 473
Target Start/End: Original strand, 37504077 - 37504182
Alignment:
| Q |
368 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
467 |
Q |
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||||||| |||||||||||||| | ||||||| | ||| ||||| | || |||| ||| | ||| || || |||||||| |||| ||||||||| ||||| |
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| T |
37504077 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
37504176 |
T |
|
| Q |
468 |
atctgt |
473 |
Q |
| |
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||||| |
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|
| T |
37504177 |
ctctgt |
37504182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 339 - 473
Target Start/End: Original strand, 12617788 - 12617922
Alignment:
| Q |
339 |
acgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatca |
438 |
Q |
| |
|
|||||| ||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| |
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| T |
12617788 |
acgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcg |
12617887 |
T |
|
| Q |
439 |
tcttgaaactcacttagacaaactgaacaatctgt |
473 |
Q |
| |
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||||||||||| |||||||||| ||||||||||| |
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| T |
12617888 |
tcttgaaactcgtttagacaaacagaacaatctgt |
12617922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 368 - 472
Target Start/End: Original strand, 37227861 - 37227965
Alignment:
| Q |
368 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
467 |
Q |
| |
|
||||||| |||||||||||||| | ||||||| ||||||||||| |||| |||||||||| | | ||||| |||| ||||||||| | |||||| ||||| |
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| T |
37227861 |
taagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaaca |
37227960 |
T |
|
| Q |
468 |
atctg |
472 |
Q |
| |
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||||| |
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|
| T |
37227961 |
atctg |
37227965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 452
Target Start/End: Complemental strand, 1867112 - 1867028
Alignment:
| Q |
368 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcact |
452 |
Q |
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||||||| |||||||||||| | | ||||||| |||| | |||| | ||||||||||||| | | ||||| |||| ||||||||| |
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| T |
1867112 |
taagccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcact |
1867028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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