View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17268_low_11 (Length: 298)

Name: NF17268_low_11
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17268_low_11
NF17268_low_11
[»] chr6 (2 HSPs)
chr6 (1-284)||(11274309-11274590)
chr6 (216-280)||(12174286-12174350)
[»] chr8 (7 HSPs)
chr8 (53-284)||(12181626-12181857)
chr8 (53-284)||(12426054-12426285)
chr8 (1-69)||(12181545-12181613)
chr8 (1-69)||(12425973-12426041)
chr8 (228-284)||(13580453-13580509)
chr8 (228-284)||(32646672-32646728)
chr8 (228-272)||(38075793-38075836)
[»] chr3 (6 HSPs)
chr3 (11-216)||(17712341-17712546)
chr3 (11-216)||(19013598-19013803)
chr3 (208-284)||(17713234-17713310)
chr3 (208-284)||(19014463-19014539)
chr3 (245-279)||(33510197-33510231)
chr3 (247-280)||(27541167-27541200)
[»] chr1 (2 HSPs)
chr1 (214-284)||(35204310-35204380)
chr1 (251-280)||(29664192-29664221)
[»] chr7 (4 HSPs)
chr7 (248-284)||(26914438-26914474)
chr7 (248-284)||(31329682-31329718)
chr7 (230-280)||(35812594-35812644)
chr7 (247-277)||(36066110-36066140)
[»] chr5 (2 HSPs)
chr5 (248-284)||(3597007-3597043)
chr5 (247-283)||(32257781-32257817)
[»] chr4 (1 HSPs)
chr4 (247-280)||(12167047-12167080)
[»] chr2 (1 HSPs)
chr2 (247-280)||(5163789-5163822)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 11274309 - 11274590
Alignment:
Q  1 caaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctttaacaacaaaagaatcaatacctttaaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  11274309 caaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttgtctttaacaacaaaagaatcaatacctttaaaa-at 11274407  T
Q  101 gaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgattttggcagggtcgaccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  11274408 gaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgattgtcgcagggtcgcccta 11274507  T
Q  201 agtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 284  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  11274508 agtatgattgagtgagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttactt-gtaattagtgttat 11274590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 12174286 - 12174350
Alignment:
Q  216 gcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagta 280  Q
    |||||||| || | ||||||||| | | || || |||||||||||||||||||||||| ||||||    
T  12174286 gcagtaacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagta 12174350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 53 - 284
Target Start/End: Original strand, 12181626 - 12181857
Alignment:
Q  53 tattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgt 152  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12181626 tattagagtttttctttaacaacaaaagaatcaatatctttaaaaaatgaagaataaatatattcacgactaagttcacatgcaaggatgaagcacatgt 12181725  T
Q  153 gagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaa 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||    
T  12181726 gagtagtccgcatctagtatattatatgattttggcagggtcgccctaagtatggttgggagagcagcaacttaagacaccattttattaaagacattaa 12181825  T
Q  253 aattattatttttacttagtaattagtattat 284  Q
    ||||||||||||||||||||||||||||||||    
T  12181826 aattattatttttacttagtaattagtattat 12181857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 53 - 284
Target Start/End: Original strand, 12426054 - 12426285
Alignment:
Q  53 tattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgt 152  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12426054 tattagagtttttctttaacaacaaaagaatcaatatctttaaaaaatgaagaataaatatattcacgactaagttcacatgcaaggatgaagcacatgt 12426153  T
Q  153 gagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaa 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||    
T  12426154 gagtagtccgcatctagtatattatatgattttggcagggtcgccctaagtatggttgggagagcagcaacttaagacaccattttattaaagacattaa 12426253  T
Q  253 aattattatttttacttagtaattagtattat 284  Q
    ||||||||||||||||||||||||||||||||    
T  12426254 aattattatttttacttagtaattagtattat 12426285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12181545 - 12181613
Alignment:
Q  1 caaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttcttt 69  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12181545 caaaagaaagcgatcatttaatttatcaactagatgagaacatttttaatgttattagagtttttcttt 12181613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12425973 - 12426041
Alignment:
Q  1 caaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttcttt 69  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12425973 caaaagaaagcgatcatttaatttatcaactagatgagaacatttttaatgttattagagtttttcttt 12426041  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 13580509 - 13580453
Alignment:
Q  228 gacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 284  Q
    ||||||||||| |||  | || ||||||||||||||||||||| || ||||||||||    
T  13580509 gacaccatttttttaggggcaccaaaattattatttttacttaatagttagtattat 13580453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 32646728 - 32646672
Alignment:
Q  228 gacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 284  Q
    ||||||||||| |||||||||  |||||||||||||||| | |||| | ||||||||    
T  32646728 gacaccatttttttaaagacactaaaattattatttttattcagtagtgagtattat 32646672  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 38075836 - 38075793
Alignment:
Q  228 gacaccattttcttaaagacatcaaaattattatttttacttagt 272  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||    
T  38075836 gacaccatttt-ttagggacatcaaaattattatttttacttagt 38075793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 17712341 - 17712546
Alignment:
Q  11 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17712341 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctataacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 17712440  T
Q  111 tatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattg 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17712441 tatattcacgactaaattcacatgcaaggatgaaggacatgtgagcagtccgcatctagtatattatatgattttggcagggtcgccctaagtatgattg 17712540  T
Q  211 agagag 216  Q
    ||||||    
T  17712541 agagag 17712546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 19013598 - 19013803
Alignment:
Q  11 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19013598 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctataacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 19013697  T
Q  111 tatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattg 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19013698 tatattcacgactaaattcacatgcaaggatgaaggacatgtgagcagtccgcatctagtatattatatgattttggcagggtcgccctaagtatgattg 19013797  T
Q  211 agagag 216  Q
    ||||||    
T  19013798 agagag 19013803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 17713234 - 17713310
Alignment:
Q  208 ttgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 284  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17713234 ttgagagagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttat 17713310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 19014463 - 19014539
Alignment:
Q  208 ttgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 284  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19014463 ttgagagagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttat 19014539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 33510231 - 33510197
Alignment:
Q  245 gacatcaaaattattatttttacttagtaattagt 279  Q
    ||||||||||||||||||||||||||||| |||||    
T  33510231 gacatcaaaattattatttttacttagtagttagt 33510197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 27541200 - 27541167
Alignment:
Q  247 catcaaaattattatttttacttagtaattagta 280  Q
    |||||||||||||||||||| |||||||||||||    
T  27541200 catcaaaattattatttttatttagtaattagta 27541167  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 35204380 - 35204310
Alignment:
Q  214 gagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 284  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35204380 gagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 35204310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Original strand, 29664192 - 29664221
Alignment:
Q  251 aaaattattatttttacttagtaattagta 280  Q
    ||||||||||||||||||||||||||||||    
T  29664192 aaaattattatttttacttagtaattagta 29664221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 26914474 - 26914438
Alignment:
Q  248 atcaaaattattatttttacttagtaattagtattat 284  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26914474 atcaaaattattatttttacttagtagttagtattat 26914438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 31329718 - 31329682
Alignment:
Q  248 atcaaaattattatttttacttagtaattagtattat 284  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31329718 atcaaaattattatttttacttcgtaattagtattat 31329682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 35812594 - 35812644
Alignment:
Q  230 caccattttcttaaagacatcaaaattattatttttacttagtaattagta 280  Q
    ||||||||| |||  | |||||||||||||||||||||||| |||||||||    
T  35812594 caccatttttttaggggcatcaaaattattatttttacttaataattagta 35812644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 277
Target Start/End: Original strand, 36066110 - 36066140
Alignment:
Q  247 catcaaaattattatttttacttagtaatta 277  Q
    |||||||||||||||||||||||||||||||    
T  36066110 catcaaaattattatttttacttagtaatta 36066140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 3597043 - 3597007
Alignment:
Q  248 atcaaaattattatttttacttagtaattagtattat 284  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3597043 atcaaaattattatttttatttagtaattagtattat 3597007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 32257817 - 32257781
Alignment:
Q  247 catcaaaattattatttttacttagtaattagtatta 283  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  32257817 catcaaaataattatttttacttagtagttagtatta 32257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 12167047 - 12167080
Alignment:
Q  247 catcaaaattattatttttacttagtaattagta 280  Q
    ||||||||||||||||||| ||||||||||||||    
T  12167047 catcaaaattattatttttgcttagtaattagta 12167080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 5163789 - 5163822
Alignment:
Q  247 catcaaaattattatttttacttagtaattagta 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  5163789 catcaaaattattatttttacttagtagttagta 5163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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