View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17268_low_14 (Length: 262)
Name: NF17268_low_14
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4775721 - 4775957
Alignment:
| Q |
1 |
ctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgccgttaatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
4775721 |
ctatggcaatatgcttcatcctagagt---gaaagacagggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgcagttaatgg |
4775817 |
T |
|
| Q |
101 |
aatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775818 |
aatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgtt |
4775917 |
T |
|
| Q |
201 |
ggttgcttcttgcatgaccaagagataatattagggccaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775918 |
ggttgcttcttgcatgaccaagagataatattagggccaa |
4775957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43061082 - 43061318
Alignment:
| Q |
1 |
ctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgccgttaatgg |
100 |
Q |
| |
|
|||||||||| || ||||||||| ||| |||| |||||||||||||||||| ||||||||| |||||| ||| ||||||| |||||||| |||||||| |
|
|
| T |
43061082 |
ctatggcaatgtgtttcatcctatagt---gaaaaacagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatgg |
43061178 |
T |
|
| Q |
101 |
aatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
43061179 |
aatttgaagttcttgtaacaagttttgaacccatattaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaactgtt |
43061278 |
T |
|
| Q |
201 |
ggttgcttcttgcatgaccaagagataatattagggccaa |
240 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43061279 |
ggctgcttcttgcatgaccaagagataatattagggccaa |
43061318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 45192914 - 45192874
Alignment:
| Q |
30 |
tgaaagacagggtttgcacatagagatgtagctccaatgtt |
70 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45192914 |
tgaaggacagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University