View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_low_16 (Length: 252)
Name: NF17268_low_16
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34977142 - 34977370
Alignment:
| Q |
1 |
atattaccttgaccaagcttaaatttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactacaa |
100 |
Q |
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| T |
34977142 |
atattaccttgaccaagcttaaacttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactacaa |
34977241 |
T |
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| Q |
101 |
aaagacacaatcaaaatcaacattacattactaaccaattcagtttcataacagaaagatgtgaaatgtaatttaaatttgattgattattaattaatta |
200 |
Q |
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| T |
34977242 |
aaagacacaatcaaaatcaacattacattactaaccaattcagtttcataagagaaagatgtgaaatgtaatttaaatttgattgatt----attaatta |
34977337 |
T |
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| Q |
201 |
ccttcaacttgatctccattatcaggagtttcc |
233 |
Q |
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| T |
34977338 |
ccttcaacttgatctccattatcaggagtttcc |
34977370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 3497274 - 3497367
Alignment:
| Q |
6 |
accttgaccaagcttaaatttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactaca |
99 |
Q |
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| T |
3497274 |
accttgtccaagcgtgaaattgaaagtagttcccctatctctgctagaatcaaacttcgtaccatcaagcaacgttccggtataatgaactaca |
3497367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 18850563 - 18850620
Alignment:
| Q |
40 |
ctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaacta |
97 |
Q |
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| T |
18850563 |
ctatcacgacttgaatcaaatttagttccatcaagcaaagttccagtgtagtgaacta |
18850620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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