View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17268_low_19 (Length: 240)

Name: NF17268_low_19
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17268_low_19
NF17268_low_19
[»] chr2 (3 HSPs)
chr2 (1-225)||(40058998-40059222)
chr2 (1-225)||(40084936-40085160)
chr2 (1-225)||(40077012-40077250)
[»] chr3 (2 HSPs)
chr3 (76-214)||(53322412-53322548)
chr3 (109-184)||(44352747-44352822)
[»] chr4 (2 HSPs)
chr4 (111-214)||(22016195-22016298)
chr4 (83-202)||(20005703-20005812)
[»] chr8 (1 HSPs)
chr8 (97-197)||(5450715-5450814)
[»] chr7 (2 HSPs)
chr7 (107-168)||(35052914-35052975)
chr7 (74-147)||(35052966-35053039)
[»] chr5 (2 HSPs)
chr5 (83-138)||(12735846-12735901)
chr5 (83-138)||(12798673-12798728)
[»] chr1 (1 HSPs)
chr1 (83-202)||(14124553-14124662)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40058998 - 40059222
Alignment:
Q  1 tttctggttctattcactaccctcgtagtactccccaggttttattttatgtctctctttgattctgtttgtgtgttgaatttaaacagtgctgaatttg 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058998 tttctggttctattcactaccctcgtagtactccacaggttttattttatgtctctctttgattctgtttgtgtgttgaatttaaacagtgctgaatttg 40059097  T
Q  101 ttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40059098 ttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgtt 40059197  T
Q  201 aaaggccaggttctctttgcttcat 225  Q
    |||||||||||||||||||||||||    
T  40059198 aaaggccaggttctctttgcttcat 40059222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40084936 - 40085160
Alignment:
Q  1 tttctggttctattcactaccctcgtagtactccccaggttttattttatgtctctctttgattctgtttgtgtgttgaatttaaacagtgctgaatttg 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084936 tttctggttctattcactaccctcgtagtactccacaggttttattttatgtctctctttgattctgtttgtgtgttgaatttaaacagtgctgaatttg 40085035  T
Q  101 ttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40085036 ttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgtt 40085135  T
Q  201 aaaggccaggttctctttgcttcat 225  Q
    |||||||||||||||||||||||||    
T  40085136 aaaggccaggttctctttgcttcat 40085160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40077012 - 40077250
Alignment:
Q  1 tttctggttctattcactaccctcgtagtactccccaggttttattttatgtctctctttgattctgtttgtgtgtt--------------gaatttaaa 86  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||              || ||||||    
T  40077012 tttctggttctattcactaccctcgtagtactccacaggttttattttatgtctctctttgattctgtttgtgagtttttgcattgtatttgattttaaa 40077111  T
Q  87 cagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaact 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077112 cagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaact 40077211  T
Q  187 tacatgaacctgttaaaggccaggttctctttgcttcat 225  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40077212 tacatgaacctgttaaaggccaggttctctttgcttcat 40077250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 53322412 - 53322548
Alignment:
Q  76 ttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgt 175  Q
    |||| ||||||| ||| |||||||||||||| ||||||||||||||| |||| ||||| |||| || |||||||||| || |||||||  ||| |||||     
T  53322412 ttgattttaaacggtgttgaatttgttgttggttatagatgtggccaaacctcattcaaaaatatatagatggaggattttatgtcatccaaa-ctatg- 53322509  T
Q  176 tttctggaacttacatgaacctgttaaaggccaggttct 214  Q
    |||||||||||||||| |||| ||||||||  |||||||    
T  53322510 tttctggaacttacataaaccagttaaaggttaggttct 53322548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 44352822 - 44352747
Alignment:
Q  109 tatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaa 184  Q
    ||||||||||||| |  |||||||| | | | ||||| || ||| | |||||||||||||||||||||||||||||    
T  44352822 tatagatgtggcctgctcttattcaaacagcaaaagaaggtggaatagatgtcattgaaacctatgttttctggaa 44352747  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 22016298 - 22016195
Alignment:
Q  111 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 210  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || || || |||  ||||||||    
T  22016298 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgagccggttcgaggccagg 22016199  T
Q  211 ttct 214  Q
    ||||    
T  22016198 ttct 22016195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 20005703 - 20005812
Alignment:
Q  83 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctgg 182  Q
    ||||| ||| |||||||||||||| || |||||||||||| |||||||||| ||||       |||||||||| ||||||| |||| ||||| ||||| |    
T  20005703 taaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat-------tggaggactttatgtcatcgaaa-ctatg-tttct-g 20005792  T
Q  183 aacttacatgaacctgttaa 202  Q
    |||||||||||||| |||||    
T  20005793 aacttacatgaaccagttaa 20005812  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 5450715 - 5450814
Alignment:
Q  97 tttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacc 196  Q
    ||||||||||||| |||||||||||||| ||||| |||||  ||||||| |||||| | ||||| ||| |||||||||||||||||||   |||||||||    
T  5450715 tttgttgttgttt-tagatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaacc 5450813  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 35052975 - 35052914
Alignment:
Q  107 tttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaa 168  Q
    |||||||||||||||| |||||||||| |||| || ||||||||||||| ||||||| ||||    
T  35052975 tttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgtcatcgaaa 35052914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 35053039 - 35052966
Alignment:
Q  74 tgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatg 147  Q
    |||||| ||||||  ||| ||||||||| |||| ||||||||||||||| |||||||||| |||| || |||||    
T  35053039 tgttgattttaaaaggtgttgaatttgtcgttggttatagatgtggccaaaccttattcaaaaatttatagatg 35052966  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 12735901 - 12735846
Alignment:
Q  83 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaat 138  Q
    ||||||||| |||||||||||||| || |||||||||||| |||||||||| ||||    
T  12735901 taaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat 12735846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 12798728 - 12798673
Alignment:
Q  83 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaat 138  Q
    ||||||||| |||||||||||||| || |||||||||||| |||||||||| ||||    
T  12798728 taaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat 12798673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 14124662 - 14124553
Alignment:
Q  83 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctgg 182  Q
    ||||| ||| |||||||||||||| || |||||||||||| |||||||||| ||||       |||||||||| ||||||| |||| ||||| ||||| |    
T  14124662 taaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat-------tggaggactttatgtcatcgaaa-ctatg-tttct-g 14124573  T
Q  183 aacttacatgaacctgttaa 202  Q
    |||||||||||||| |||||    
T  14124572 aacttacatgaaccagttaa 14124553  T

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