View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_low_21 (Length: 229)
Name: NF17268_low_21
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 35204631 - 35204808
Alignment:
| Q |
20 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagtcttgtgagagttggtcagcaggtgcaaagtaaaaattccaggcggttcat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| | ||||||||| |||||||||||| |
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| T |
35204631 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagccttatgagagttggtcaggaggtgtagagtaaaaatgtcaggcggttcat |
35204730 |
T |
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| Q |
120 |
agtggnnnnnnntcaaaattttaggagtaatttctaaaagtcaggggatgcaagtgcatcctctcaatggtacgtggc |
197 |
Q |
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|| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35204731 |
agcggaaaaaaatcaaaattttaggagtaatttctaaaaatcaggggatgcaagtgcatcctctcaatggtacgtggc |
35204808 |
T |
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Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 12181249 - 12181072
Alignment:
| Q |
20 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagtcttgtgagagttggtcagcaggtgcaaagtaaaaattccaggcggttcat |
119 |
Q |
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|||||| |||||||||||||| ||||||||||| ||||||| |||||| ||| ||||||||||| || ||||||| ||||||||| ||||| ||||||| |
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| T |
12181249 |
tcaaaagggtacaaactctagcaagagaatgtgg-aagcaatccaacagccttatgagagttggtaaggaggtgcagagtaaaaatgccaggaggttcat |
12181151 |
T |
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| Q |
120 |
agtggnnnnnnn-tcaaaattttaggagtaatttctaaaagtcaggggatgcaagtgcatcctctcaatggtacgtggc |
197 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12181150 |
agtggaaaaaaaatcaaaattttaggagtaatttctaaaagtcaggggatgcaagtgcatcctctcaatggtacgtggc |
12181072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 12425677 - 12425500
Alignment:
| Q |
20 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagtcttgtgagagttggtcagcaggtgcaaagtaaaaattccaggcggttcat |
119 |
Q |
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|||||| |||||||||||||| ||||||||||| ||||||| |||||| ||| ||||||||||| || ||||||| ||||||||| ||||| ||||||| |
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| T |
12425677 |
tcaaaagggtacaaactctagcaagagaatgtgg-aagcaatccaacagccttatgagagttggtaaggaggtgcagagtaaaaatgccaggaggttcat |
12425579 |
T |
|
| Q |
120 |
agtggnnnnnnn-tcaaaattttaggagtaatttctaaaagtcaggggatgcaagtgcatcctctcaatggtacgtggc |
197 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12425578 |
agtggaaaaaaaatcaaaattttaggagtaatttctaaaagtcaggggatgcaagtgcatcctctcaatggtacgtggc |
12425500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 11273948 - 11273844
Alignment:
| Q |
20 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagtcttgtgagagttggtcagcaggtgcaaagtaaaaattccaggcggttcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
11273948 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagtcttgtgagagttggtcaggaggtgcaaagtaaaaatgtcaggcggttcat |
11273849 |
T |
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| Q |
120 |
agtgg |
124 |
Q |
| |
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||||| |
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|
| T |
11273848 |
agtgg |
11273844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 11273383 - 11273321
Alignment:
| Q |
135 |
aaattttaggagtaatttctaaaagtcaggggatgcaagtgcatcctctcaatggtacgtggc |
197 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11273383 |
aaattttagaagtaatttctaaaagtcaggggatgcaagtgcatcctctcaatggtacgtggc |
11273321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 17712078 - 17711980
Alignment:
| Q |
20 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagtcttgtgagagttggtcagcaggtgcaaagtaaaaattccaggcggttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| || |||||| |||||||||||| |
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| T |
17712078 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaatagtcttgtgagagtaggtcaggaggtgcagagcaaaaatgccaggcggttca |
17711980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 19013335 - 19013237
Alignment:
| Q |
20 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaacagtcttgtgagagttggtcagcaggtgcaaagtaaaaattccaggcggttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| || |||||| |||||||||||| |
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| T |
19013335 |
tcaaaaaggtacaaactctagtgagagaatgtggtaagcaatgcaatagtcttgtgagagtaggtcaggaggtgcagagcaaaaatgccaggcggttca |
19013237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 17711976 - 17711938
Alignment:
| Q |
159 |
gtcaggggatgcaagtgcatcctctcaatggtacgtggc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
17711976 |
gtcaggggatgcaagtgcatcctctcaatggtacgtggc |
17711938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 19013233 - 19013195
Alignment:
| Q |
159 |
gtcaggggatgcaagtgcatcctctcaatggtacgtggc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
19013233 |
gtcaggggatgcaagtgcatcctctcaatggtacgtggc |
19013195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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