View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_low_23 (Length: 225)
Name: NF17268_low_23
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 5503425 - 5503235
Alignment:
| Q |
17 |
cacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5503425 |
cacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaat |
5503326 |
T |
|
| Q |
117 |
atgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5503325 |
atgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
5503235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 5490612 - 5490422
Alignment:
| Q |
17 |
cacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaat |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5490612 |
cacagatttgggaggctatatattctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaat |
5490513 |
T |
|
| Q |
117 |
atgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
207 |
Q |
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|||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| || |||| |||||||||||| |
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| T |
5490512 |
atgtgaatgcttagaaggtttcatgccaaaatttcaactagagtgggattcatcaaattggtctggtggatgtctaagaaaaacacgttta |
5490422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 5853845 - 5854035
Alignment:
| Q |
17 |
cacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaat |
116 |
Q |
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|||| |||||||||||||||| | ||| |||||||||||| |||||| ||||| |||||| |||| ||| |||||||||||| || ||| |||||||| |
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| T |
5853845 |
cacaaatttgggaggctatatcttctcgtcctgcagaccaatgtgataattatgccttgtgcggtatcaactctaactgcaatagtaataactttccaac |
5853944 |
T |
|
| Q |
117 |
atgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
207 |
Q |
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|||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
5853945 |
atgtgaatgcttggaaggtttcatgccaaaatttcaaccagagtgggagtcatcaaattggtctggtgggtgtgtaaggaaaacaagttta |
5854035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 5455407 - 5455245
Alignment:
| Q |
45 |
tcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgcttagaaggtttcgtgcca |
144 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| | || |||||||||||||||||| || ||||||||| ||||| |
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| T |
5455407 |
tcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttggaaggtttcatgcca |
5455308 |
T |
|
| Q |
145 |
aaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
207 |
Q |
| |
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|||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||| |||| |
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| T |
5455307 |
aaatttcaaccaaagtgggagtcatcagattggtctggtgggtgtgtaaggaaaacacattta |
5455245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 5526258 - 5526075
Alignment:
| Q |
24 |
ttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaa |
123 |
Q |
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|||||||||||||| | ||| ||||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||| || |
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| T |
5526258 |
ttgggaggctatatcttctcgtcctgtagaccagtgtgatccttatgacacttgtggtatcaattctaattgcaatgttgatatctttccaatatgtaaa |
5526159 |
T |
|
| Q |
124 |
tgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
207 |
Q |
| |
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||||| ||||||||| ||||||||| ||||||||||||| ||| ||||||||| || ||||||| |||||||||||| |||| |
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| T |
5526158 |
tgcttggaaggtttcatgccaaaatttcaaccagagtggcagttgtcaaattgggctagtgggtgtgtaaggaaaacaccttta |
5526075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 5485191 - 5485070
Alignment:
| Q |
17 |
cacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaat |
116 |
Q |
| |
|
|||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||| |
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| T |
5485191 |
cacaaatttgggaggctatatcttctcgtcctgcagaccagtgtgatgcttatgacttgtgtggtatcaattctaactgcaatggcgaaagctttccaat |
5485092 |
T |
|
| Q |
117 |
atgtgaatgcttagaaggtttc |
138 |
Q |
| |
|
|||||||||||| ||||||||| |
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| T |
5485091 |
atgtgaatgcttggaaggtttc |
5485070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 5848572 - 5848716
Alignment:
| Q |
45 |
tcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgcttagaaggtttcgtgcca |
144 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| ||| |||||||||||| | ||| ||||||||||||||||||||| ||||||||| ||||| |
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| T |
5848572 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
5848671 |
T |
|
| Q |
145 |
aaatctcaaccagagtgggagtcatcaaattggtctggtgggtgc |
189 |
Q |
| |
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|||| ||||||| | ||| |||||| |||||||||||||||||| |
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| T |
5848672 |
aaatttcaaccaaaatggaagtcattgaattggtctggtgggtgc |
5848716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 5446845 - 5446683
Alignment:
| Q |
45 |
tcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgcttagaaggtttcgtgcca |
144 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || |||||||||||||| ||| || ||||||||| |||| |
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| T |
5446845 |
tcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaatatgtgtatgtttggaaggtttcaggcca |
5446746 |
T |
|
| Q |
145 |
aaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
207 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||||| |||| |
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|
| T |
5446745 |
aaatttcaactgaagtgggaggcatcagattggtctggtgggtgcgtaaggaaaacacattta |
5446683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 5802147 - 5802318
Alignment:
| Q |
17 |
cacagatttgggaggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaat |
116 |
Q |
| |
|
|||| |||||| ||||||||| | ||| ||| |||||||||||||||| |||| ||| || |||| ||| || || |||||| | || |||||| | |
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| T |
5802147 |
cacaaatttggaaggctatatcttctcgtccggcagaccagtgtgatgattattccttatgcggtatcaactcaaattgcaatattaatgaatttccagt |
5802246 |
T |
|
| Q |
117 |
atgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtg |
188 |
Q |
| |
|
|||||||||| | ||||||||| |||| |||| | ||| | |||||||||||||| |||||||||||||||| |
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|
| T |
5802247 |
atgtgaatgcgtggaaggtttcatgccgaaatttgaactacagtgggagtcatcagattggtctggtgggtg |
5802318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 5827907 - 5827986
Alignment:
| Q |
109 |
tttccaatatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtg |
188 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||||||| |||| || | ||| |||| || ||||||||||||||||| |
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|
| T |
5827907 |
tttccagtatgtgaatgcttggaaggtttcatgccaaaatttcaaacaaaatggaagtcgtcgaattggtctggtgggtg |
5827986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 20343961 - 20343884
Alignment:
| Q |
111 |
tccaatatgtgaatgcttagaaggtttcgtgccaaaatctcaaccagagtgggagtcatcaaattggtctggtgggtg |
188 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||||| |||| || | ||| ||||||| |||||||||| ||||| |
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| T |
20343961 |
tccaatttgtgaatgcttggaaggtttcacgccaaaatttcaatcaaaatggaagtcatcggattggtctggcgggtg |
20343884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 25808967 - 25809129
Alignment:
| Q |
45 |
tcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgcttagaaggtttcgtgcca |
144 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || |||||||||||||| ||| || ||||||||| |||| |
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| T |
25808967 |
tcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaatatgtgtatgtttggaaggtttcaggcca |
25809066 |
T |
|
| Q |
145 |
aaatctcaaccagagtgggagtcatcaaattggtctggtgggtgcataaggaaaacacgttta |
207 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||||| |||| |
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|
| T |
25809067 |
aaatttcaactgaagtgggaggcatcagattggtctggtgggtgcgtaaggaaaacacattta |
25809129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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