View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_low_4 (Length: 425)
Name: NF17268_low_4
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 54988077 - 54987683
Alignment:
| Q |
20 |
ggagccccctcctagactcttgtggtggtcttattcaatgattgtattgcaatcttggtcgcaataattctcagtgtgtctgagatatggagcttagtcc |
119 |
Q |
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| T |
54988077 |
ggagccccctcctagactcttgtggtggtcttattcaatgattgtattgcaatcttggtcgcaataattctcagtgtgtc-gagatatggagcttagtcc |
54987979 |
T |
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| Q |
120 |
atgatatacgtattgctcgccatcttcatcttgactgtgtcgttttcgaaacgggttctaccattgttgcagttgttgtcctcaaccaaactaccatgca |
219 |
Q |
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| T |
54987978 |
atgatatacgtattgctcgccatcttcatcttgactgtgtcattttcgaaacgggttctaccattgttgcagttgttgtcctcaaccaaactaccatgca |
54987879 |
T |
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| Q |
220 |
ctatctcttatttcaagcctctcctagaagaggtttttaatcatctaaatcttttgtattggtctgtcactactcagcattattttagagaggtcaactc |
319 |
Q |
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| T |
54987878 |
ctatctcttatttcaagcctctcctagaagaggtttttaatcatctaaatcttttgtattggtctgtcactactcagcattattttagagaggtcaattc |
54987779 |
T |
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| Q |
320 |
atctgcttatttattagccaaagaggatttgatactctcttctcttcgattttagttaatattgattgtaattttctatatggtattttgatgatg |
415 |
Q |
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| T |
54987778 |
atctgcttatttattacccaaagaggatttgatactctcttctcttcgattttagttaatattgattgtaattttctatatggtattttgatgatg |
54987683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 17115142 - 17115202
Alignment:
| Q |
100 |
tgagatatggagcttagtccatgatatacgtattgctcgccatcttcatcttgactgtgtc |
160 |
Q |
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| T |
17115142 |
tgagatgtggagtttagtgcatgctttacgtattgctcgccatcttcacattgattgtgtc |
17115202 |
T |
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