View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17268_low_5 (Length: 397)

Name: NF17268_low_5
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17268_low_5
NF17268_low_5
[»] chr2 (25 HSPs)
chr2 (13-397)||(40059382-40059766)
chr2 (34-397)||(40085282-40085632)
chr2 (34-209)||(40077652-40077827)
chr2 (232-340)||(35056063-35056171)
chr2 (361-397)||(1830152-1830188)
chr2 (361-397)||(42419906-42419942)
chr2 (363-397)||(7103394-7103428)
chr2 (261-327)||(11344360-11344425)
chr2 (363-397)||(23974414-23974448)
chr2 (363-397)||(33197182-33197216)
chr2 (364-397)||(10619141-10619174)
chr2 (368-397)||(37419588-37419617)
chr2 (361-393)||(2416426-2416458)
chr2 (361-397)||(8017547-8017583)
chr2 (294-330)||(11513859-11513895)
chr2 (361-397)||(15370244-15370280)
chr2 (361-397)||(18179062-18179098)
chr2 (361-397)||(21616581-21616617)
chr2 (294-330)||(22681258-22681294)
chr2 (361-397)||(22878211-22878247)
chr2 (361-397)||(27317492-27317528)
chr2 (361-397)||(30331864-30331900)
chr2 (361-397)||(40837358-40837394)
chr2 (361-397)||(41170723-41170759)
chr2 (361-397)||(43985322-43985358)
[»] chr4 (23 HSPs)
chr4 (41-126)||(22015825-22015910)
chr4 (361-397)||(22662172-22662208)
chr4 (361-397)||(22666651-22666687)
chr4 (361-397)||(25571372-25571408)
chr4 (361-397)||(27043751-27043787)
chr4 (361-397)||(41336873-41336909)
chr4 (365-397)||(52315118-52315150)
chr4 (366-397)||(52428782-52428813)
chr4 (368-397)||(3891711-3891740)
chr4 (361-394)||(9720578-9720611)
chr4 (369-397)||(7367975-7368003)
chr4 (361-397)||(15173224-15173260)
chr4 (361-397)||(17822786-17822822)
chr4 (361-397)||(19305039-19305075)
chr4 (361-397)||(26590637-26590673)
chr4 (361-397)||(32071976-32072012)
chr4 (361-397)||(37636107-37636143)
chr4 (361-397)||(41433488-41433524)
chr4 (361-397)||(42403944-42403980)
chr4 (361-397)||(52169941-52169977)
chr4 (294-330)||(54327522-54327558)
chr4 (361-397)||(55437189-55437225)
chr4 (361-397)||(55870263-55870299)
[»] chr3 (15 HSPs)
chr3 (361-397)||(25447166-25447202)
chr3 (361-397)||(26911704-26911740)
chr3 (361-396)||(33405114-33405149)
chr3 (226-330)||(4534428-4534530)
chr3 (362-397)||(26990146-26990181)
chr3 (363-397)||(31615481-31615515)
chr3 (368-397)||(32582857-32582886)
chr3 (361-397)||(3775772-3775808)
chr3 (361-397)||(16072962-16072998)
chr3 (361-397)||(20210849-20210885)
chr3 (361-397)||(20874232-20874268)
chr3 (361-393)||(29114538-29114570)
chr3 (361-397)||(30657399-30657435)
chr3 (361-397)||(36507013-36507049)
chr3 (361-393)||(41848641-41848673)
[»] chr1 (17 HSPs)
chr1 (360-397)||(17009503-17009540)
chr1 (361-397)||(6292605-6292641)
chr1 (260-312)||(23370389-23370440)
chr1 (361-397)||(30257797-30257833)
chr1 (361-396)||(2522709-2522744)
chr1 (368-397)||(172494-172523)
chr1 (368-397)||(29045854-29045883)
chr1 (368-397)||(30014000-30014029)
chr1 (368-396)||(5894113-5894141)
chr1 (369-397)||(23445454-23445482)
chr1 (361-397)||(24334308-24334344)
chr1 (361-397)||(26184856-26184892)
chr1 (294-330)||(27738253-27738289)
chr1 (361-397)||(29793619-29793655)
chr1 (361-397)||(39976131-39976167)
chr1 (361-397)||(41505787-41505823)
chr1 (361-397)||(51929383-51929419)
[»] chr8 (14 HSPs)
chr8 (361-397)||(38602440-38602476)
chr8 (359-397)||(2606160-2606198)
chr8 (359-397)||(6496812-6496850)
chr8 (361-394)||(6950435-6950468)
chr8 (368-397)||(10727464-10727493)
chr8 (361-397)||(1096603-1096639)
chr8 (361-397)||(2487929-2487965)
chr8 (361-397)||(4560615-4560651)
chr8 (361-397)||(7008711-7008747)
chr8 (361-397)||(14280342-14280378)
chr8 (361-397)||(15180652-15180688)
chr8 (361-397)||(30251375-30251411)
chr8 (361-397)||(30657698-30657734)
chr8 (361-397)||(40728332-40728368)
[»] chr7 (24 HSPs)
chr7 (361-397)||(30812251-30812287)
chr7 (361-397)||(44822071-44822107)
chr7 (292-330)||(23918916-23918954)
chr7 (294-327)||(28178930-28178963)
chr7 (360-397)||(39551469-39551506)
chr7 (360-397)||(44917447-44917484)
chr7 (294-330)||(1417225-1417261)
chr7 (361-397)||(1418532-1418568)
chr7 (369-397)||(7612551-7612579)
chr7 (361-397)||(9210934-9210970)
chr7 (361-397)||(11619079-11619115)
chr7 (361-397)||(19302484-19302520)
chr7 (361-397)||(19624290-19624326)
chr7 (361-397)||(24048653-24048689)
chr7 (361-397)||(28691757-28691793)
chr7 (294-330)||(30456523-30456559)
chr7 (361-397)||(33266407-33266443)
chr7 (361-397)||(33673190-33673226)
chr7 (361-397)||(34464142-34464178)
chr7 (361-393)||(36696345-36696377)
chr7 (294-330)||(38010675-38010711)
chr7 (294-330)||(39591540-39591576)
chr7 (361-397)||(47046029-47046065)
chr7 (361-397)||(47941421-47941457)
[»] chr6 (10 HSPs)
chr6 (361-397)||(4308890-4308926)
chr6 (361-397)||(30536886-30536922)
chr6 (361-392)||(7351597-7351628)
chr6 (294-327)||(2205644-2205677)
chr6 (361-397)||(1231220-1231256)
chr6 (294-330)||(7713986-7714022)
chr6 (361-397)||(7785665-7785701)
chr6 (361-397)||(21405075-21405111)
chr6 (361-397)||(31594298-31594334)
chr6 (361-397)||(34404647-34404683)
[»] chr5 (18 HSPs)
chr5 (361-397)||(9107203-9107239)
chr5 (361-397)||(32010058-32010094)
chr5 (361-397)||(32197846-32197882)
chr5 (362-393)||(40111382-40111413)
chr5 (359-397)||(17369314-17369352)
chr5 (368-397)||(40335794-40335823)
chr5 (361-397)||(499652-499688)
chr5 (361-393)||(1084064-1084096)
chr5 (361-397)||(10640066-10640102)
chr5 (361-397)||(14331479-14331515)
chr5 (361-397)||(14706205-14706241)
chr5 (365-397)||(14932413-14932445)
chr5 (361-397)||(34198534-34198570)
chr5 (361-397)||(36796628-36796664)
chr5 (361-397)||(39594920-39594956)
chr5 (361-397)||(41419432-41419468)
chr5 (361-397)||(41534551-41534587)
chr5 (294-330)||(42181165-42181201)
[»] scaffold0110 (1 HSPs)
scaffold0110 (356-392)||(33839-33875)


Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 40059766 - 40059382
Alignment:
Q  13 aatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059766 aatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagcca 40059667  T
Q  113 ctgccttcacaaatttcactaaatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacag 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059666 ctgccttcacaaatttcactaaatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacag 40059567  T
Q  213 tagatcaacaccatgtttggataaactactttattaagcacttacagcatataagttcttacgtatatgatatttctatttacaaaagataaaacaaagt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059566 tagatcaacaccatgtttggataaactactttattaagcacttacaacatataagttcttacgtatatgatatttctatttacaaaagataaaacaaagt 40059467  T
Q  313 catattgttttcatataattattatgtttcatta-atatcttggagagattatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059466 catattgttttcatataattattat-tttcattatctatcttggagagattatgtcagtagataaactcaaataagtcaatccaaa 40059382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 34 - 397
Target Start/End: Complemental strand, 40085632 - 40085282
Alignment:
Q  34 accaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcacta 133  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| || |||||||| ||||| |||||||||||||| |    
T  40085632 accaaactttacccatagttccattcagaacaaacatatggaccaatccggagatgcacatatagacctgcctcagctactgctttcacaaatttcacca 40085533  T
Q  134 aatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacagtagatcaacaccatgtttgga 233  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||  |||| |||||| | |||| |||||||||| | ||| ||||||    
T  40085532 aatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattaagatagactttcttagcttatagtagatcaagatcatatttgga 40085433  T
Q  234 taaactactttattaagcacttacagcatataagttcttacgtatatgatatttctatttacaaaagataaaacaaagtcatattgttttcatataatta 333  Q
    |||| ||||| ||||||  |||| | ||||||||| ||||            |||||||||||||||||     | |||||||||||||||||||| |||    
T  40085432 taaaatacttaattaagtgcttataacatataagtgctta------------ttctatttacaaaagat--tttagagtcatattgttttcatatagtta 40085347  T
Q  334 ttatgtttcatta-atatcttggagagattatgtcagtagataaactcaaataagtcaatccaaa 397  Q
     ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085346 atatgtttcattatctatcttggagagattatgtcagtagataaactcaaataagtcaatccaaa 40085282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 40077827 - 40077652
Alignment:
Q  34 accaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcacta 133  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  40077827 accaaactttacccgtagttccattcagcacacacatatggaccgatccggagatgcacatatagtcctgcctcagccactgcctttacaaatttcacta 40077728  T
Q  134 aatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaacctta 209  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40077727 aatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattataatagtctttctaacctta 40077652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 340
Target Start/End: Complemental strand, 35056171 - 35056063
Alignment:
Q  232 gataaactactttattaagcacttacagcatataagttcttacgtatatgatatttctatttacaaaagataaaacaaagtcatattgttttcatataat 331  Q
    ||||||| |||| |||||   |||| ||||||||||| ||||  |||| | | ||||||||||||||||||||||||||  |||| || |||||||||||    
T  35056171 gataaacaacttaattaattgcttatagcatataagtgcttatatatacgttgtttctatttacaaaagataaaacaaaaccatactggtttcatataat 35056072  T
Q  332 tattatgtt 340  Q
    || ||||||    
T  35056071 taatatgtt 35056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 1830152 - 1830188
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1830152 ttatgtcagtaaataaactcaaataagtcaatccaaa 1830188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 42419906 - 42419942
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||| |||||||||||||||||||||||||||    
T  42419906 ttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 7103428 - 7103394
Alignment:
Q  363 atgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||||||||||||    
T  7103428 atgtcaatagataaactcaaataagtcaatccaaa 7103394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 11344425 - 11344360
Alignment:
Q  261 atataagttcttacgtatatgatatttctatttacaaaagataaaacaaagtcatattgttttcata 327  Q
    |||||||| |||| | ||| |||||||||||  ||||||||||||| ||||||| ||||||||||||    
T  11344425 atataagtgcttatgcataagatatttctata-acaaaagataaaagaaagtcaaattgttttcata 11344360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 23974448 - 23974414
Alignment:
Q  363 atgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||||||||||    
T  23974448 atgtcagtagataaacccaaataagtcaatccaaa 23974414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 33197216 - 33197182
Alignment:
Q  363 atgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||||||||||||||||||||||    
T  33197216 atgtcagttgataaactcaaataagtcaatccaaa 33197182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Complemental strand, 10619174 - 10619141
Alignment:
Q  364 tgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||| ||||||||||||    
T  10619174 tgtcagtagataaactcaaatgagtcaatccaaa 10619141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 37419617 - 37419588
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  37419617 agtagataaactcaaataagtcaatccaaa 37419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 2416426 - 2416458
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatc 393  Q
    |||||| ||||||||||||||||||||||||||    
T  2416426 ttatgttagtagataaactcaaataagtcaatc 2416458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 8017547 - 8017583
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  8017547 ttatgtcaatagataacctcaaataagtcaatccaaa 8017583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 11513859 - 11513895
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  11513859 acaaaagataaaataaagtcaaattgttttcatataa 11513895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 15370280 - 15370244
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  15370280 ttatgccagtagataagctcaaataagtcaatccaaa 15370244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 18179062 - 18179098
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  18179062 ttatgttagtagataagctcaaataagtcaatccaaa 18179098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 21616617 - 21616581
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||| |||||||| |||||||||||||||||    
T  21616617 ttatgtcagtggataaactgaaataagtcaatccaaa 21616581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 22681294 - 22681258
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    |||||||||||||||||| || |||||||||||||||    
T  22681294 acaaaagataaaacaaagccaaattgttttcatataa 22681258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 22878211 - 22878247
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  22878211 ttatgtcagtggataagctcaaataagtcaatccaaa 22878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 27317492 - 27317528
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  27317492 ttatgtcggtagataagctcaaataagtcaatccaaa 27317528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 30331864 - 30331900
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| || |||||||||||||||||    
T  30331864 ttatgtcagtagataagctgaaataagtcaatccaaa 30331900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 40837394 - 40837358
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| |||||||||| |||||||||    
T  40837394 ttatgtcagtagataagctcaaataagccaatccaaa 40837358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41170723 - 41170759
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| |||||||||||||||||||| |||||||||    
T  41170723 ttatgttagtagataaactcaaataagccaatccaaa 41170759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 43985322 - 43985358
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  43985322 ttatgtcagtagataaacttaaataagtcgatccaaa 43985358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 22015825 - 22015910
Alignment:
Q  41 tttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaat 126  Q
    ||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||  || ||  | || |||||||||||||||    
T  22015825 tttacccgtaattccattcagcacacacatatggaccgatccggagatgcacatataaacctgctgctgctactgccttcacaaat 22015910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 22662208 - 22662172
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||||||||||||||    
T  22662208 ttatgttagtagataaactcaaataagtcaatccaaa 22662172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 22666687 - 22666651
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||||||||||||||    
T  22666687 ttatgttagtagataaactcaaataagtcaatccaaa 22666651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 25571372 - 25571408
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||| |||||||||    
T  25571372 ttatgtcagtagataaactcaaataagccaatccaaa 25571408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 27043787 - 27043751
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||||||||||||    
T  27043787 ttatgtcagtagataagctcaaataagtcaatccaaa 27043751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41336873 - 41336909
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||||||||||||||    
T  41336873 ttatgtgagtagataaactcaaataagtcaatccaaa 41336909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 52315150 - 52315118
Alignment:
Q  365 gtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||||||||    
T  52315150 gtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 397
Target Start/End: Original strand, 52428782 - 52428813
Alignment:
Q  366 tcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||||    
T  52428782 tcagtagataaactcaaataagtcaatccaaa 52428813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Original strand, 3891711 - 3891740
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  3891711 agtagataaactcaaataagtcaatccaaa 3891740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 394
Target Start/End: Complemental strand, 9720611 - 9720578
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatcc 394  Q
    |||||| |||||||||||||||||||||||||||    
T  9720611 ttatgttagtagataaactcaaataagtcaatcc 9720578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 369 - 397
Target Start/End: Complemental strand, 7368003 - 7367975
Alignment:
Q  369 gtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||||    
T  7368003 gtagataaactcaaataagtcaatccaaa 7367975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 15173260 - 15173224
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||  |||||||||||||||||||    
T  15173260 ttatgtcagtagataagttcaaataagtcaatccaaa 15173224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 17822822 - 17822786
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  17822822 ttatgtcagtagataagctcaaataagttaatccaaa 17822786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 19305039 - 19305075
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  19305039 ttatgtcaatagataatctcaaataagtcaatccaaa 19305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 26590637 - 26590673
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  26590637 ttatgtaagtagataaactcaaataattcaatccaaa 26590673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 32071976 - 32072012
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  32071976 ttatgtcaatagataaactcaaataagtcagtccaaa 32072012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 37636143 - 37636107
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  37636143 ttatgttagtagataaactcaaataaatcaatccaaa 37636107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41433488 - 41433524
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  41433488 ttatgtcaggagataaactcaaataagtcaattcaaa 41433524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 42403980 - 42403944
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  42403980 ttatgtcagttgataagctcaaataagtcaatccaaa 42403944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 52169977 - 52169941
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| | ||||||||||||||||||||||||||||    
T  52169977 ttatgtaaatagataaactcaaataagtcaatccaaa 52169941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 54327558 - 54327522
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||||||||||| | |||||||||||||    
T  54327558 acaaaagataaaacaaagtcaaactgttttcatataa 54327522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 55437189 - 55437225
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  55437189 ttatggcagtagataaactcaaataagccaatccaaa 55437225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 55870299 - 55870263
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  55870299 ttatgtcattagataaactcaaataagttaatccaaa 55870263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 25447202 - 25447166
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||||||||||||    
T  25447202 ttatgtcagtagataaactcaaataagtcaatccaaa 25447166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 26911704 - 26911740
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||||||||||||    
T  26911704 ttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 33405149 - 33405114
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaa 396  Q
    ||||||||||||||||||||||||||||||||||||    
T  33405149 ttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 330
Target Start/End: Complemental strand, 4534530 - 4534428
Alignment:
Q  226 tgtttggataaactactttattaagcacttacagcatataagttcttacgtatatgatatttctatttacaaaagataaaacaaagtcatattgttttca 325  Q
    ||||||||||||| |||| |||||||||||| ||  ||||||| |||||||||| | ||||| |||  | |||||||| || ||||||  |||||||| |    
T  4534530 tgtttggataaacaacttaattaagcacttatag--tataagtgcttacgtataagttatttatataaataaaagatataataaagtcgaattgttttaa 4534433  T
Q  326 tataa 330  Q
    |||||    
T  4534432 tataa 4534428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 26990181 - 26990146
Alignment:
Q  362 tatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatccaaa 26990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 397
Target Start/End: Complemental strand, 31615515 - 31615481
Alignment:
Q  363 atgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| |||||||||||||||||||||||||||||    
T  31615515 atgtccgtagataaactcaaataagtcaatccaaa 31615481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Original strand, 32582857 - 32582886
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  32582857 agtagataaactcaaataagtcaatccaaa 32582886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 3775808 - 3775772
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  3775808 ttatgccagtagataaactcaaataaggcaatccaaa 3775772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 16072998 - 16072962
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  16072998 ttatgtcattagataagctcaaataagtcaatccaaa 16072962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 20210885 - 20210849
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  20210885 ttatgtcagtagataacctcaaataaatcaatccaaa 20210849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 20874268 - 20874232
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| || |||||||||||||||||||||||||    
T  20874268 ttatgtcattatataaactcaaataagtcaatccaaa 20874232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 29114538 - 29114570
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatc 393  Q
    ||||||||||||||||| |||||||||||||||    
T  29114538 ttatgtcagtagataaagtcaaataagtcaatc 29114570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 30657399 - 30657435
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  30657399 ttatgtcagtagataaactcaaataaatcaattcaaa 30657435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 36507049 - 36507013
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||| |||||||||||||||||||||| |||||||||    
T  36507049 ttatatcagtagataaactcaaataagccaatccaaa 36507013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 41848673 - 41848641
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatc 393  Q
    |||||| ||||||||||||||||||||||||||    
T  41848673 ttatgttagtagataaactcaaataagtcaatc 41848641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 17009540 - 17009503
Alignment:
Q  360 attatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  17009540 attatgtcagtagataaactcaaataagtcaattcaaa 17009503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 6292605 - 6292641
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||||||||||||    
T  6292605 ttatgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 23370440 - 23370389
Alignment:
Q  260 catataagttcttacgtatatgatatttctatttacaaaagataaaacaaagt 312  Q
    ||||||||| |||||||||| | |||||||||| |||||||||||||||||||    
T  23370440 catataagtacttacgtataagctatttctatt-acaaaagataaaacaaagt 23370389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 30257797 - 30257833
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30257797 ttatgtcagtagataaactcaaataagtaaatccaaa 30257833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 2522709 - 2522744
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaa 396  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2522709 ttatgccagtagataaactcaaataagtcaatccaa 2522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 172523 - 172494
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  172523 agtagataaactcaaataagtcaatccaaa 172494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 29045883 - 29045854
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  29045883 agtagataaactcaaataagtcaatccaaa 29045854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 30014029 - 30014000
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  30014029 agtagataaactcaaataagtcaatccaaa 30014000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 5894141 - 5894113
Alignment:
Q  368 agtagataaactcaaataagtcaatccaa 396  Q
    |||||||||||||||||||||||||||||    
T  5894141 agtagataaactcaaataagtcaatccaa 5894113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 369 - 397
Target Start/End: Original strand, 23445454 - 23445482
Alignment:
Q  369 gtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||||    
T  23445454 gtagataaactcaaataagtcaatccaaa 23445482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 24334308 - 24334344
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||| || ||||||||||||||||||||||||||    
T  24334308 ttatgtccgttgataaactcaaataagtcaatccaaa 24334344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 26184856 - 26184892
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| |||| |||||||||||||||||||||||    
T  26184856 ttatgtcaatagaaaaactcaaataagtcaatccaaa 26184892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 27738289 - 27738253
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  27738289 acaaaagataaaataaagtcaaattgttttcatataa 27738253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 29793655 - 29793619
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  29793655 ttatgtcagtagataagctcaaataagtcaatacaaa 29793619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 39976167 - 39976131
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  39976167 ttatgtcagtagataatctcaaataagtcagtccaaa 39976131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41505787 - 41505823
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| |||||||||| |||||||||    
T  41505787 ttatgtcagtagataagctcaaataagccaatccaaa 41505823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 51929419 - 51929383
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| |||||| |||||||||||||    
T  51929419 ttatgtcagtagataagctcaaaaaagtcaatccaaa 51929383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 38602440 - 38602476
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||||||||||||    
T  38602440 ttatgtcagtagataagctcaaataagtcaatccaaa 38602476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 2606160 - 2606198
Alignment:
Q  359 gattatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  2606160 gattatgtcagtagataagctcgaataagtcaatccaaa 2606198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 6496850 - 6496812
Alignment:
Q  359 gattatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  6496850 gattatgttagtagataaactcaaacaagtcaatccaaa 6496812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 394
Target Start/End: Original strand, 6950435 - 6950468
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatcc 394  Q
    ||||| ||||||||||||||||||||||||||||    
T  6950435 ttatgccagtagataaactcaaataagtcaatcc 6950468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Original strand, 10727464 - 10727493
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  10727464 agtagataaactcaaataagtcaatccaaa 10727493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 1096603 - 1096639
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| || |||||||||||||||||||||||||    
T  1096603 ttatgtcactaaataaactcaaataagtcaatccaaa 1096639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 2487965 - 2487929
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||| |||||||||||| |||||||||    
T  2487965 ttatgtcagtagatgaactcaaataagccaatccaaa 2487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 4560615 - 4560651
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  4560615 ttatgtcaatagataagctcaaataagtcaatccaaa 4560651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 7008711 - 7008747
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  7008711 ttatgccagtagataaactcaaataagtcaattcaaa 7008747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 14280378 - 14280342
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  14280378 ttatgccagtagataaaatcaaataagtcaatccaaa 14280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 15180652 - 15180688
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  15180652 ttatggcagtagataaactcaaataagccaatccaaa 15180688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 30251411 - 30251375
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| |||||||||| |||||||||    
T  30251411 ttatgtcagtagataagctcaaataagccaatccaaa 30251375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 30657734 - 30657698
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| |||||||||||||||||||| |||||||    
T  30657734 ttatgtcattagataaactcaaataagtcgatccaaa 30657698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 40728368 - 40728332
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  40728368 ttatgccagtagatagactcaaataagtcaatccaaa 40728332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 30812251 - 30812287
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||| ||||||||||||||||||||||||    
T  30812251 ttatgtcagtaggtaaactcaaataagtcaatccaaa 30812287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 44822071 - 44822107
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||| |||||||||||||||||||||||||||    
T  44822071 ttatgtcagcagataaactcaaataagtcaatccaaa 44822107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 23918916 - 23918954
Alignment:
Q  292 ttacaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  23918916 ttacaaaagataaaataaagtcaaattgttttcatataa 23918954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 28178930 - 28178963
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcata 327  Q
    ||||||||||||| ||||||||||||||||||||    
T  28178930 acaaaagataaaataaagtcatattgttttcata 28178963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 39551506 - 39551469
Alignment:
Q  360 attatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  39551506 attatgtaagtagaaaaactcaaataagtcaatccaaa 39551469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 44917484 - 44917447
Alignment:
Q  360 attatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| | |||||||||||||||||||||||||||    
T  44917484 attatgtcgggagataaactcaaataagtcaatccaaa 44917447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 1417225 - 1417261
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  1417225 acaaaagataaaataaagtcaaattgttttcatataa 1417261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 1418532 - 1418568
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  1418532 ttatgccagtagataagctcaaataagtcaatccaaa 1418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 369 - 397
Target Start/End: Original strand, 7612551 - 7612579
Alignment:
Q  369 gtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||||    
T  7612551 gtagataaactcaaataagtcaatccaaa 7612579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 9210934 - 9210970
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  9210934 ttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 11619115 - 11619079
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| |||||||||| |||||||||    
T  11619115 ttatgtcagtagataagctcaaataagccaatccaaa 11619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 19302520 - 19302484
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  19302520 ttatgtcagtagataagctcaaataagtcaattcaaa 19302484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 19624290 - 19624326
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| |||||||||||||||||||||| |||||    
T  19624290 ttatgtcaatagataaactcaaataagtcaagccaaa 19624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 24048653 - 24048689
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  24048653 ttatgtcagtagataaactcaaataagtaaattcaaa 24048689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 28691793 - 28691757
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| || |||||||||||||||||||||||||||    
T  28691793 ttatgttagcagataaactcaaataagtcaatccaaa 28691757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 30456559 - 30456523
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  30456559 acaaaagataaaataaagtcaaattgttttcatataa 30456523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 33266443 - 33266407
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  33266443 ttatgtcggtagataagctcaaataagtcaatccaaa 33266407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 33673190 - 33673226
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  33673190 ttatgtcagtagataagctcaaatgagtcaatccaaa 33673226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 34464178 - 34464142
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34464178 ttatgtcaatagataaactcaaataaatcaatccaaa 34464142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 36696345 - 36696377
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatc 393  Q
    ||||||||||||||| |||||||||||||||||    
T  36696345 ttatgtcagtagatacactcaaataagtcaatc 36696377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 38010675 - 38010711
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    |||||||||||||||||| || |||||||||||||||    
T  38010675 acaaaagataaaacaaagccaaattgttttcatataa 38010711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 39591576 - 39591540
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  39591576 acaaaagataaaataaagtcaaattgttttcatataa 39591540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 47046065 - 47046029
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||| | ||||||||||||||||||    
T  47046065 ttatgtcagtagataagcacaaataagtcaatccaaa 47046029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 47941421 - 47941457
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||  |||||||||    
T  47941421 ttatgtcagtagataaactcaaataaaccaatccaaa 47941457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 4308890 - 4308926
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4308890 ttatgtcagtagataaactcaaataagccaatccaaa 4308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 30536922 - 30536886
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30536922 ttatgtaagtagataaactcaaataagtcaatccaaa 30536886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 392
Target Start/End: Complemental strand, 7351628 - 7351597
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaat 392  Q
    ||||||||||||||||||||||||||||||||    
T  7351628 ttatgtcagtagataaactcaaataagtcaat 7351597  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 2205677 - 2205644
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcata 327  Q
    ||||||||||||||||||||| ||||||||||||    
T  2205677 acaaaagataaaacaaagtcaaattgttttcata 2205644  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 1231256 - 1231220
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  1231256 ttatgtcaatagataaactcaaataaatcaatccaaa 1231220  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 7713986 - 7714022
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  7713986 acaaaagataaaataaagtcaaattgttttcatataa 7714022  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 7785701 - 7785665
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  7785701 ttatgtcagtagataaattcaaataagacaatccaaa 7785665  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 21405111 - 21405075
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  21405111 ttatgtcagtatataagctcaaataagtcaatccaaa 21405075  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 31594334 - 31594298
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  31594334 ttatgtaagtagataaacacaaataagtcaatccaaa 31594298  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 34404683 - 34404647
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34404683 ttatgtcagttgataaactcaaataagtaaatccaaa 34404647  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 9107203 - 9107239
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9107203 ttatgtcactagataaactcaaataagtcaatccaaa 9107239  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 32010058 - 32010094
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| ||||||||||||||||||||||||||||||    
T  32010058 ttatgtgagtagataaactcaaataagtcaatccaaa 32010094  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 32197846 - 32197882
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32197846 ttatgtcagtagataaactcaaaaaagtcaatccaaa 32197882  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 40111382 - 40111413
Alignment:
Q  362 tatgtcagtagataaactcaaataagtcaatc 393  Q
    ||||||||||||||||||||||||||||||||    
T  40111382 tatgtcagtagataaactcaaataagtcaatc 40111413  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 17369314 - 17369352
Alignment:
Q  359 gattatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  17369314 gattatgtcagtagataagttcaaataagtcaatccaaa 17369352  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 40335823 - 40335794
Alignment:
Q  368 agtagataaactcaaataagtcaatccaaa 397  Q
    ||||||||||||||||||||||||||||||    
T  40335823 agtagataaactcaaataagtcaatccaaa 40335794  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 499688 - 499652
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  499688 ttatgtcagtaggtaagctcaaataagtcaatccaaa 499652  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 1084096 - 1084064
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatc 393  Q
    ||||||||||| |||||||||||||||||||||    
T  1084096 ttatgtcagtaaataaactcaaataagtcaatc 1084064  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 10640066 - 10640102
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||||||||||||||||  ||||||||    
T  10640066 ttatgtcagtagataaactcaaataagctaatccaaa 10640102  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 14331479 - 14331515
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  14331479 ttatgacagtagataagctcaaataagtcaatccaaa 14331515  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 14706241 - 14706205
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  14706241 ttatgtcagtaggtaagctcaaataagtcaatccaaa 14706205  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 14932413 - 14932445
Alignment:
Q  365 gtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||| ||||||||||||||||||||    
T  14932413 gtcagtagataagctcaaataagtcaatccaaa 14932445  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 34198534 - 34198570
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||| |||| |||||||||||||||||||||||||    
T  34198534 ttatgttagtaaataaactcaaataagtcaatccaaa 34198570  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 36796664 - 36796628
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  36796664 ttatgtcattagataagctcaaataagtcaatccaaa 36796628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 39594920 - 39594956
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  39594920 ttatgtcggtagataagctcaaataagtcaatccaaa 39594956  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41419432 - 41419468
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||| | ||||||||||||||||||||    
T  41419432 ttatgtcagtagattagctcaaataagtcaatccaaa 41419468  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 41534551 - 41534587
Alignment:
Q  361 ttatgtcagtagataaactcaaataagtcaatccaaa 397  Q
    |||||||||||||| | ||||||||||||||||||||    
T  41534551 ttatgtcagtagattagctcaaataagtcaatccaaa 41534587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 42181201 - 42181165
Alignment:
Q  294 acaaaagataaaacaaagtcatattgttttcatataa 330  Q
    ||||||||||||||||||||| || ||||||||||||    
T  42181201 acaaaagataaaacaaagtcaaatggttttcatataa 42181165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 33875 - 33839
Alignment:
Q  356 agagattatgtcagtagataaactcaaataagtcaat 392  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  33875 agagcttatgtcagtagataaattcaaataagtcaat 33839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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