View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17268_low_6 (Length: 390)
Name: NF17268_low_6
Description: NF17268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17268_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 3418515 - 3418150
Alignment:
| Q |
18 |
gttattaattggaaagaacattttgatcataattgcatgtgtctatgtacctggacgtttatgtgtctgcttcatgtttcagctttgatgcatccctatc |
117 |
Q |
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| T |
3418515 |
gttattaattggaaagaacattttgatcataattgcatgtgtctatgtacctcgacgtttatgtgtctgcttcatgtttcaactttgatgcatccctatc |
3418416 |
T |
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| Q |
118 |
accaaagtttacgtttctttcttgttctcattcttctttataagcagaaatcaactaaggtaacggtacatcaaactacactaacaaaatttccatgcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3418415 |
accaaagtttacgtttctttcttgttctcattcttctttataagcagaaatcaactaaggtaacgttacatcaaactacactaacaaaatttccatgcat |
3418316 |
T |
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| Q |
218 |
nnnnnnnnnnnnnnnnnnnnntgtcttcaaggcacacagtagataatttgagtgttgttttctaattctttattattatttgagtgtttatagtttatan |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3418315 |
aaaaaaactacactaaaaaaatgtcttcaaggcacacagtagataatttgagtgttgttttctaattctttattattatttgagtgtttatagtttatat |
3418216 |
T |
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| Q |
318 |
nnnnnnnacgtaaaataaatttagagagaagggatgatgtttcaatctaaagtaggatattcttcg |
383 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
3418215 |
tttttttacgtaaaataaatttagagagaaggaatgatgtttcaatctaaagtaggatattgttcg |
3418150 |
T |
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