View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17269_high_1 (Length: 967)

Name: NF17269_high_1
Description: NF17269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17269_high_1
NF17269_high_1
[»] chr8 (10 HSPs)
chr8 (205-951)||(9333814-9334562)
chr8 (11-179)||(9334557-9334725)
chr8 (828-951)||(9331493-9331616)
chr8 (77-237)||(9941136-9941290)
chr8 (137-237)||(8207599-8207699)
chr8 (504-553)||(20284824-20284873)
chr8 (504-553)||(21071453-21071502)
chr8 (469-503)||(6161948-6161982)
chr8 (697-746)||(8207364-8207413)
chr8 (76-117)||(8207707-8207748)
[»] chr1 (8 HSPs)
chr1 (76-237)||(42362717-42362886)
chr1 (512-553)||(13361494-13361535)
chr1 (468-504)||(40139125-40139161)
chr1 (469-504)||(11947795-11947830)
chr1 (469-504)||(31184281-31184316)
chr1 (469-504)||(43612105-43612140)
chr1 (499-553)||(45190678-45190732)
chr1 (467-504)||(46947979-46948016)
[»] chr2 (3 HSPs)
chr2 (520-566)||(44050019-44050065)
chr2 (469-504)||(3299141-3299176)
chr2 (469-502)||(10749717-10749750)
[»] chr7 (4 HSPs)
chr7 (464-504)||(30818033-30818073)
chr7 (469-504)||(22692084-22692119)
chr7 (469-504)||(34992360-34992395)
chr7 (470-504)||(43171209-43171243)
[»] chr4 (11 HSPs)
chr4 (468-504)||(3475868-3475904)
chr4 (469-504)||(11012141-11012176)
chr4 (469-504)||(24088600-24088635)
chr4 (464-502)||(12074189-12074227)
chr4 (504-570)||(34259943-34260009)
chr4 (466-504)||(51160673-51160711)
chr4 (467-504)||(23220333-23220370)
chr4 (467-504)||(24772669-24772706)
chr4 (469-502)||(35661635-35661668)
chr4 (467-504)||(39010173-39010210)
chr4 (468-501)||(51324618-51324651)
[»] chr3 (4 HSPs)
chr3 (468-504)||(19418193-19418229)
chr3 (469-504)||(50652388-50652423)
chr3 (504-570)||(47683907-47683973)
chr3 (467-504)||(50280123-50280160)
[»] chr6 (2 HSPs)
chr6 (468-502)||(21857605-21857639)
chr6 (467-504)||(12177575-12177612)
[»] chr5 (4 HSPs)
chr5 (469-503)||(8897382-8897416)
chr5 (504-570)||(22203824-22203890)
chr5 (524-553)||(21012585-21012614)
chr5 (467-504)||(31708368-31708405)
[»] scaffold0020 (1 HSPs)
scaffold0020 (467-504)||(155904-155941)


Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 205 - 951
Target Start/End: Complemental strand, 9334562 - 9333814
Alignment:
Q  205 cgtaaaataacgtagatatatggattttcagtgatcctctccatgttttactctaattccttgagagtatcattgaaaataaggtgcattcttactcttt 304  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334562 cgtaaaataaggtagatatatggattttcagtgatcctctccatgttttactctaattccttgagagtatcattgaaaataaggtgcattcttactcttt 9334463  T
Q  305 tttgctgccaatgaacaaaactattcaaaaataattttcaagacttcaaacgctttcttgttgttttaaatgcgatgtttcgctcgagccaaatttacga 404  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9334462 tttgctgccaatgaacaaagctattcaaaaataattttcaagacttcaaaagctttcttgttgttttaaatgcgatgtttcgctcgagccaaatttacca 9334363  T
Q  405 cataatttttgctaaaagtaaaatctccaaattttgaattactcactcacaggtgatactccttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334362 cataatttttgctgaaagtaaaatctccaaattttgaattactcactcacaagtgatactccttgagaaatgttatttgtacaaccattttatgacaact 9334263  T
Q  505 aagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc--------------agcaaaataggggttttacc 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||              ||||||||||||||||||||    
T  9334262 aagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaagtatcattactcaactcattttatctagcaaaataggggttttacc 9334163  T
Q  591 atagaaaatgacaccagccgcatgattctaaacatatatttgtctaactcgaatctattgtttattatgttggtgtataattgtaagtcattgtataggg 690  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  9334162 atagaagatgacaccagccacatgattgtaaacatatatttgtctaactcgaatctattgtttattatgttgttgtataattgtaagtcactgtataggg 9334063  T
Q  691 gtgaagccatcttaatatccattccaccatttcttagaagtgagcaagacaaggaatctatatctgtggttatgggacatggccctgctaaagtatctgt 790  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9334062 gtgaagccatcttaatatccattccaccatttcttagaagtgagcaagacaaggaaactatatctgtggttatgggacatggccctgctaaagtatctgt 9333963  T
Q  791 gccagatagtatgtagttgatgttgtagatggtgaatttgaagctagtgttggctttgccgttgactttgtcacttgctttgttgaagctatttctcaaa 890  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  9333962 gccagatggtatgtagttgatgttgtagatggtgaatttgaagctagt------------gttgactttgtcacttgctttgttgaagctatttctcaaa 9333875  T
Q  891 ctaaggtgaaggctacttagtaggctttaccgagcctcattacactaatgaaatttgaggt 951  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9333874 ctaaggtgaaggctacttagtagactttaccgagcctcattacactaatgaaatttgaggt 9333814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 9334725 - 9334557
Alignment:
Q  11 cataggctcaaccaacaatagttgcattttttgtacaattaaagagtgcctaaagaacaactctctttgatttattatattctcctcctaatgtaaattg 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9334725 cataggctcaaccaacaatagttgcatttttggtacaattaaagagtgcctaaagaacaactctctttgatttattatattctcctcctagtgtaaattg 9334626  T
Q  111 taaagtatccaattctctctttctttcttttttcctgtaggaaaaagatttggaagcaggacttgtaaa 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9334625 taaagtatccaattctctctttctttcttttttcctgtaggaaaaagatttggaagcaggactcgtaaa 9334557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 828 - 951
Target Start/End: Complemental strand, 9331616 - 9331493
Alignment:
Q  828 ttgaagctagtgttggctttgccgttgactttgtcacttgctttgttgaagctatttctcaaactaaggtgaaggctacttagtaggctttaccgagcct 927  Q
    ||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||  |    
T  9331616 ttgaagctagtgttggcttcgtggttgactttgtcacttactttgttgaagctatttctcaagctaagttgaaagctacttagtagactttaccgaggtt 9331517  T
Q  928 cattacactaatgaaatttgaggt 951  Q
     ||||||||||||||||| |||||    
T  9331516 gattacactaatgaaattggaggt 9331493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 9941290 - 9941136
Alignment:
Q  77 ttgatttattatattctcctcctaatgtaaattgtaaagtatccaattctctctttctttcttttttcctgtaggaaaaagatttggaagcaggacttgt 176  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    |||||| ||||||| | |||||||| | ||||    
T  9941290 ttgatttgttatattctcctcctaatgtaaattgtaatgtatccaattctctc--tctttcttt----ctgtagaaaaaagagtgggaagcagaagttgt 9941197  T
Q  177 aaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagtg 237  Q
    ||| |||||| || |||||||||||||||| | ||||| |||||||| || ||||||||||    
T  9941196 aaatgttacgggaacagcaaagccaagccgcagaataaggtagatatctgaattttcagtg 9941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 8207699 - 8207599
Alignment:
Q  137 cttttttcctgtaggaaaaagatttggaagcaggacttgtaaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagt 236  Q
    ||||||| |||||| ||||||| |||||||| | | ||||||| |||||  || |||||||||||||||| ||||||| |||||||| ||  ||||||||    
T  8207699 ctttttttctgtagaaaaaagagttggaagcggaagttgtaaatgttaccggaacagcaaagccaagccgcaaaataaggtagatatctgagttttcagt 8207600  T
Q  237 g 237  Q
    |    
T  8207599 g 8207599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 553
Target Start/End: Original strand, 20284824 - 20284873
Alignment:
Q  504 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 553  Q
    ||||||| ||||||| |||||||||||||||| ||||||| |||||||||    
T  20284824 taagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttg 20284873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 553
Target Start/End: Original strand, 21071453 - 21071502
Alignment:
Q  504 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 553  Q
    ||||||| ||||||| |||||||||||||||| ||||||| |||||||||    
T  21071453 taagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttg 21071502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 6161948 - 6161982
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaac 503  Q
    |||||||| ||||||||||||||||||||||||||    
T  6161948 gagaaatgatatttgtacaaccattttatgacaac 6161982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 746
Target Start/End: Complemental strand, 8207413 - 8207364
Alignment:
Q  697 ccatcttaatatccattccaccatttcttagaagtgagcaagacaaggaa 746  Q
    ||||||||||||  |||||||||||| |||||  ||||||||||||||||    
T  8207413 ccatcttaatatgtattccaccattttttagatctgagcaagacaaggaa 8207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 8207748 - 8207707
Alignment:
Q  76 tttgatttattatattctcctcctaatgtaaattgtaaagta 117  Q
    |||| ||||||||||| |||||||||||||||| ||||||||    
T  8207748 tttggtttattatattttcctcctaatgtaaatcgtaaagta 8207707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 42362886 - 42362717
Alignment:
Q  76 tttgatttattatattctcctcctaatgtaaattgtaaagtatccaattc-------tctctttctttcttttttcct-gtaggaaaaagatttggaagc 167  Q
    ||||||||||||||||||||||||||| |||| |||||| | ||||||||       | | ||| ||| ||||||  | |||| ||||||| ||||||||    
T  42362886 tttgatttattatattctcctcctaatataaactgtaaattttccaattcctttttatttatttatttattttttttttgtagaaaaaagagttggaagc 42362787  T
Q  168 aggacttgtaaaggttacgagaccagcaaagccaagccgtaaaataacgtagatatatggattttcagtg 237  Q
     | | ||||||| |||||| ||  ||||||||||||||||||||||| |||||||| ||  |||||||||    
T  42362786 ggaagttgtaaatgttacgggaatagcaaagccaagccgtaaaataaggtagatatctgagttttcagtg 42362717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 553
Target Start/End: Complemental strand, 13361535 - 13361494
Alignment:
Q  512 gagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 553  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  13361535 gagaaaaagaaggttgtcacaaaaattgtcataaaattgttg 13361494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 468 - 504
Target Start/End: Original strand, 40139125 - 40139161
Alignment:
Q  468 tgagaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||||||| |||||||||||||||||||||||||||    
T  40139125 tgagaaatgatatttgtacaaccattttatgacaact 40139161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Original strand, 11947795 - 11947830
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  11947795 gagaaatgatatttgtacaaccattttatgacaact 11947830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Original strand, 31184281 - 31184316
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  31184281 gagaaatgatatttgtacaaccattttatgacaact 31184316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Complemental strand, 43612140 - 43612105
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  43612140 gagaaatgatatttgtacaaccattttatgacaact 43612105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 45190678 - 45190732
Alignment:
Q  499 acaactaagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 553  Q
    |||| ||||||| ||||||| ||||||||| |||||||||||||| |||| ||||    
T  45190678 acaaataagaagagagaaaaagaaggttgttacaaaaattgtcattaaatagttg 45190732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 46947979 - 46948016
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  46947979 ttgagaaatgatatttgtacatccattttatgacaact 46948016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 520 - 566
Target Start/End: Complemental strand, 44050065 - 44050019
Alignment:
Q  520 gaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcatt 566  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  44050065 gaaggttgtcacaaaagttgtcataaaatggttgtacaagtatcatt 44050019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Complemental strand, 3299176 - 3299141
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  3299176 gagaaatgatatttgtacaaccattttatgacaact 3299141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 502
Target Start/End: Complemental strand, 10749750 - 10749717
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaa 502  Q
    |||||||| |||||||||||||||||||||||||    
T  10749750 gagaaatgatatttgtacaaccattttatgacaa 10749717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 30818073 - 30818033
Alignment:
Q  464 tccttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  30818073 tccttaagaaatgatatttgtacaaccattttatgacaact 30818033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Original strand, 22692084 - 22692119
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  22692084 gagaaatgatatttgtacaaccattttatgacaact 22692119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Complemental strand, 34992395 - 34992360
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  34992395 gagaaatgatatttgtacaaccattttatgacaact 34992360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 470 - 504
Target Start/End: Complemental strand, 43171243 - 43171209
Alignment:
Q  470 agaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||||| |||||||||||||||||||||||||||    
T  43171243 agaaatgatatttgtacaaccattttatgacaact 43171209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 468 - 504
Target Start/End: Original strand, 3475868 - 3475904
Alignment:
Q  468 tgagaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||||||| |||||||||||||||||||||||||||    
T  3475868 tgagaaatgatatttgtacaaccattttatgacaact 3475904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Original strand, 11012141 - 11012176
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  11012141 gagaaatgatatttgtacaaccattttatgacaact 11012176  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Complemental strand, 24088635 - 24088600
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  24088635 gagaaatgatatttgtacaaccattttatgacaact 24088600  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 464 - 502
Target Start/End: Complemental strand, 12074227 - 12074189
Alignment:
Q  464 tccttgagaaatgttatttgtacaaccattttatgacaa 502  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  12074227 tcctagagaaatgatatttgtacaaccattttatgacaa 12074189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 34259943 - 34260009
Alignment:
Q  504 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc 570  Q
    ||||||| ||||||| |||| ||||||||||| ||||||  ||||||||| |||  |||||||||||    
T  34259943 taagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactc 34260009  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 466 - 504
Target Start/End: Complemental strand, 51160711 - 51160673
Alignment:
Q  466 cttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  51160711 cttgagaaatgatatttgtacaaacattttatgacaact 51160673  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 23220333 - 23220370
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23220333 ttgagaaatgatatttgtacaaccattttttgacaact 23220370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 24772669 - 24772706
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  24772669 ttgagaaatgatatttgtacatccattttatgacaact 24772706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 502
Target Start/End: Complemental strand, 35661668 - 35661635
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaa 502  Q
    |||||||| |||||||||||||||||||||||||    
T  35661668 gagaaatgatatttgtacaaccattttatgacaa 35661635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Complemental strand, 39010210 - 39010173
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  39010210 ttgagaaatgatatttgtacaaccattttgtgacaact 39010173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 501
Target Start/End: Complemental strand, 51324651 - 51324618
Alignment:
Q  468 tgagaaatgttatttgtacaaccattttatgaca 501  Q
    |||||||||||||||||||||||||||| |||||    
T  51324651 tgagaaatgttatttgtacaaccattttgtgaca 51324618  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 468 - 504
Target Start/End: Complemental strand, 19418229 - 19418193
Alignment:
Q  468 tgagaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||||||| |||||||||||||||||||||||||||    
T  19418229 tgagaaatgatatttgtacaaccattttatgacaact 19418193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Original strand, 50652388 - 50652423
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||| |||||||||||||||||||||||||||    
T  50652388 gagaaatgatatttgtacaaccattttatgacaact 50652423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 47683907 - 47683973
Alignment:
Q  504 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc 570  Q
    ||||||| ||||||  |||||||||| ||||| |||||| |||||||||| |||  |||||||||||    
T  47683907 taagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactc 47683973  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Complemental strand, 50280160 - 50280123
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  50280160 ttgagaaatgatatttgtacaaccattctatgacaact 50280123  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 21857639 - 21857605
Alignment:
Q  468 tgagaaatgttatttgtacaaccattttatgacaa 502  Q
    ||||||||| |||||||||||||||||||||||||    
T  21857639 tgagaaatgatatttgtacaaccattttatgacaa 21857605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 12177575 - 12177612
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  12177575 ttgagaaatgttatttgtacaactattttgtgacaact 12177612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 8897382 - 8897416
Alignment:
Q  469 gagaaatgttatttgtacaaccattttatgacaac 503  Q
    |||||||| ||||||||||||||||||||||||||    
T  8897382 gagaaatgatatttgtacaaccattttatgacaac 8897416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 504 - 570
Target Start/End: Original strand, 22203824 - 22203890
Alignment:
Q  504 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc 570  Q
    ||||||| ||||||| |||||||||||||||||||  ||| ||||||||| |||  ||| |||||||    
T  22203824 taagaagagagaaaaggaaggttgtcacaaaaattaccatcaaatggttgtacaaatattattactc 22203890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 553
Target Start/End: Complemental strand, 21012614 - 21012585
Alignment:
Q  524 gttgtcacaaaaattgtcataaaatggttg 553  Q
    ||||||||||||||||||||||||||||||    
T  21012614 gttgtcacaaaaattgtcataaaatggttg 21012585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 31708368 - 31708405
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  31708368 ttgagaaatgatatttgtacaaccattttataacaact 31708405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 155904 - 155941
Alignment:
Q  467 ttgagaaatgttatttgtacaaccattttatgacaact 504  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  155904 ttgagaaatgatatttgtacaaccattttattacaact 155941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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