View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17269_low_11 (Length: 325)

Name: NF17269_low_11
Description: NF17269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17269_low_11
NF17269_low_11
[»] chr2 (8 HSPs)
chr2 (15-215)||(11348924-11349122)
chr2 (63-204)||(19110610-19110750)
chr2 (65-186)||(24381768-24381887)
chr2 (105-215)||(34875998-34876107)
chr2 (155-204)||(23172659-23172709)
chr2 (155-204)||(23583916-23583966)
chr2 (218-247)||(19110551-19110580)
chr2 (218-247)||(20021791-20021820)
[»] scaffold0347 (1 HSPs)
scaffold0347 (39-181)||(3350-3490)
[»] chr4 (5 HSPs)
chr4 (65-186)||(12336606-12336726)
chr4 (95-184)||(13047421-13047509)
chr4 (65-204)||(12350708-12350847)
chr4 (65-186)||(20598014-20598134)
chr4 (63-121)||(19082992-19083051)
[»] chr3 (8 HSPs)
chr3 (36-182)||(20418770-20418915)
chr3 (95-192)||(7254198-7254295)
chr3 (65-181)||(26952161-26952277)
chr3 (116-176)||(19429134-19429194)
chr3 (63-182)||(24901937-24902051)
chr3 (105-192)||(4650788-4650875)
chr3 (65-147)||(11822432-11822513)
chr3 (67-127)||(293956-294017)
[»] chr7 (7 HSPs)
chr7 (95-181)||(19380962-19381047)
chr7 (105-215)||(18366112-18366220)
chr7 (48-191)||(12182224-12182366)
chr7 (53-210)||(12245666-12245822)
chr7 (65-154)||(14302897-14302986)
chr7 (218-247)||(16205969-16205998)
chr7 (105-192)||(3135157-3135244)
[»] chr6 (4 HSPs)
chr6 (95-183)||(15940105-15940193)
chr6 (66-176)||(16373995-16374106)
chr6 (65-147)||(9192263-9192345)
chr6 (218-247)||(25782585-25782614)
[»] scaffold0329 (1 HSPs)
scaffold0329 (109-186)||(1122-1199)
[»] scaffold0258 (1 HSPs)
scaffold0258 (39-121)||(8329-8411)
[»] chr1 (1 HSPs)
chr1 (95-192)||(16243730-16243826)
[»] scaffold1923 (1 HSPs)
scaffold1923 (155-204)||(375-424)
[»] chr8 (1 HSPs)
chr8 (218-247)||(20707706-20707735)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 11348924 - 11349122
Alignment:
Q  15 atagggctttgattgaggctatcggtctttatgtttattctggattgaattatgttgttgaggttttacacacatgtcgggattggagattttatttgat 114  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11348924 atagggctctgattgaggctatcggtctttatgtttattttggattgaattatgttgttgaggttttacacacatgtcggaattggagattttatttgat 11349023  T
Q  115 gatgtatttatgaagcttatgacatggctattttggagattatgctatttatccgctgcgacgtttttgagatattttaatgtgcatgttgtttgagttt 214  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11349024 gatgtatttatgaagcttatg--atggctattttggagattatgctatttatccgctgcgacgtttttgagatattttaatgtgcatgttgtctgagttt 11349121  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 19110750 - 19110610
Alignment:
Q  63 attatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgcta 161  Q
    |||||||||||||| |||||| ||||||||||||| ||| |||||||    |||||| ||| || || |||||||||||||||||||||||| |||  ||    
T  19110750 attatgttgttgagattttacccacatgtcgggataggatattttataaagtgatgtgtttgtg-agtttatgacatggctattttggagatgtatttta 19110652  T
Q  162 tttatccgctgcgacgtttttgagatattttaatgtgcatgtt 204  Q
    |||||||||||||||| |||||||| |||||||| ||||||||    
T  19110651 tttatccgctgcgacg-ttttgagaaattttaatatgcatgtt 19110610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 24381887 - 24381768
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatt 163  Q
    |||||||||||  |||||| || |||| | ||||| |||||| |||| |||||||||||| || ||||||||||||| ||  |||||||| |||||||||    
T  24381887 tatgttgttgatattttactcatatgttgagattgtagattt-atttcatgatgtatttacgatgcttatgacatggtta--ttggagatgtatgctatt 24381791  T
Q  164 tatccgctgcgacgtttttgaga 186  Q
    ||||| ||| |||||||||||||    
T  24381790 tatccactgtgacgtttttgaga 24381768  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 34876107 - 34875998
Alignment:
Q  105 tttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttgagatattttaatgtgcatgt 203  Q
    ||||| ||| ||||||||||||| ||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||||||| |||||    |||||||    
T  34876107 tttatatgacgatgtatttatgatgcttatgacctagctattt-ggagatgtatgctatttatctgctgcgacatttttgagaaatttt-tcatgcatgt 34876010  T
Q  204 tgtttgagtttt 215  Q
    ||||||||||||    
T  34876009 tgtttgagtttt 34875998  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 23172659 - 23172709
Alignment:
Q  155 tatgctatttatccgctgcgacgtttttgagata-ttttaatgtgcatgtt 204  Q
    ||||||||||||||||||||| |||||||||| | ||||||| ||||||||    
T  23172659 tatgctatttatccgctgcgaagtttttgagaaatttttaatatgcatgtt 23172709  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 23583916 - 23583966
Alignment:
Q  155 tatgctatttatccgctgcgacgtttttgagata-ttttaatgtgcatgtt 204  Q
    ||||||||||||||||||||| |||||||||| | ||||||| ||||||||    
T  23583916 tatgctatttatccgctgcgaagtttttgagaaatttttaatatgcatgtt 23583966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 19110580 - 19110551
Alignment:
Q  218 tcttgaatatttgtattattcacgtgtttt 247  Q
    ||||||||||||||||||||||||||||||    
T  19110580 tcttgaatatttgtattattcacgtgtttt 19110551  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 20021820 - 20021791
Alignment:
Q  218 tcttgaatatttgtattattcacgtgtttt 247  Q
    ||||||||||||||||||||||||||||||    
T  20021820 tcttgaatatttgtattattcacgtgtttt 20021791  T

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Target: scaffold0347 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 3490 - 3350
Alignment:
Q  39 gtctttatgtttattctggattgaattatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgaca 138  Q
    ||||||||||| ||||| |||||| ||| ||||||||| |||||| || ||||||||| ||||||||||||||| ||||||||||||  || ||||||||    
T  3490 gtctttatgtt-attctagattga-ttacgttgttgagattttacccatatgtcgggagtggagattttatttggtgatgtatttat-tagtttatgaca 3394  T
Q  139 tggctattttggaga-ttatgctatttatccgctgcgacgtttt 181  Q
    ||||||||||||||| ||||||||| |||||| |||| ||||||    
T  3393 tggctattttggagatttatgctatatatccgttgcggcgtttt 3350  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 12336606 - 12336726
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatt 163  Q
    |||||||||||| |||||| || |||| | || |||||||||||||||||||||| |||| || |||||||||||||| | ||||||||| |||| ||||    
T  12336606 tatgttgttgagattttactcatatgttgagactggagattttatttgatgatgt-tttaagatgcttatgacatggcca-tttggagatgtatgttatt 12336703  T
Q  164 tatccgctgcgacgtttttgaga 186  Q
    |||||||||||| ||||||||||    
T  12336704 tatccgctgcgatgtttttgaga 12336726  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 13047421 - 13047509
Alignment:
Q  95 gattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttga 184  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  13047421 gattggagattt-atttgacgatgtatttatgatgcttatgacatggcta-tttggagatgtatgctaattatccgctgcgacgtttttga 13047509  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 12350708 - 12350847
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatt 163  Q
    |||||| ||||| |||||| || |||| | || | |||| ||||||| ||||||||||||||| ||| |||||||||| |||| |||||| |||||||||    
T  12350708 tatgtttttgagattttactcatatgttgagactagagaatttattttatgatgtatttatgatgct-atgacatggccattt-ggagatgtatgctatt 12350805  T
Q  164 tatccgctgcgacgtttttgagatatt-ttaatgtgcatgtt 204  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||    
T  12350806 tatccgctgcgacgtttttgagaaattcttaatatgcatgtt 12350847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 20598014 - 20598134
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatt 163  Q
    ||||||| |||| |||||| || |||| | ||||||| |||| |||||| ||||||||||||| |||||||||||| ||| |||| |||| ||||||| |    
T  20598014 tatgttgctgagattttactcatatgttgagattggaaattt-atttgacgatgtatttatgatgcttatgacatgacta-tttgaagatgtatgctaat 20598111  T
Q  164 tatccgctgcgacgtttttgaga 186  Q
    |||||||| | ||||||||||||    
T  20598112 tatccgctactacgtttttgaga 20598134  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 19082992 - 19083051
Alignment:
Q  63 attatgttgttgaggttttacacacatgtcggga-ttggagattttatttgatgatgtat 121  Q
    |||||||||||||| |||||| || ||||||||| ||||||||||||| || ||||||||    
T  19082992 attatgttgttgagattttacgcatatgtcgggatttggagattttatatggtgatgtat 19083051  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 20418915 - 20418770
Alignment:
Q  36 tcggtctttatgtttattctggattgaattatgttgttgaggttttacacacatgtcgggatt-ggagattttatttgatgatgtatttatgaagcttat 134  Q
    ||||||||||  |||||| |||||||| ||||||||||||| || ||| || ||||||||||| ||||||||||| || ||||||||| |||| | ||||    
T  20418915 tcggtctttacttttattttggattga-ttatgttgttgagattctacccatatgtcgggatttggagattttatgtggtgatgtatt-atga-gtttat 20418819  T
Q  135 gacatggctattttggagat-tatgctatttatccgctgcgacgttttt 182  Q
    ||||||  |||||||||||| |||| ||||||||||||||||| |||||    
T  20418818 gacatgaatattttggagatgtatgttatttatccgctgcgacattttt 20418770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 7254295 - 7254198
Alignment:
Q  95 gattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttgagatatttt 192  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||| ||| ||||| ||| |||| |||||||||||||||||||| |||||| |||||    
T  7254295 gattggaaattttatttgctgatgtatttatgatgcttatgacatgacta-tttggtgatgtatgttatttatccgctgcgacgttattgagaaatttt 7254198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 26952161 - 26952277
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatt 163  Q
    |||||||||||| |||| |  | |||| | |||||||||||||| ||||  |||||||||||| ||||||||| |||||| ||||||||| |||||||||    
T  26952161 tatgttgttgagattttccttatatgttgagattggagattttagttgacaatgtatttatgatgcttatgacttggcta-tttggagatgtatgctatt 26952259  T
Q  164 tatccgctgcgacgtttt 181  Q
    |||||||| |||||||||    
T  26952260 tatccgctacgacgtttt 26952277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 19429194 - 19429134
Alignment:
Q  116 atgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgac 176  Q
    |||||||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  19429194 atgtatttatgatgcttatgacatggcta-tttggagttgtatgctatttatccgctgcgac 19429134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 24901937 - 24902051
Alignment:
Q  63 attatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgcta 161  Q
    |||||||||||||| |||||| | ||||| | |||||||||||| |||    ||||||| ||| | |||||||||||||||| ||||||||| || ||||    
T  24901937 attatgttgttgagattttactctcatgttgagattggagattt-att----gatgtatgtataatgcttatgacatggcta-tttggagatgtaagcta 24902030  T
Q  162 tttatccgctgcgacgttttt 182  Q
    ||||||| ||||||| |||||    
T  24902031 tttatccactgcgacattttt 24902051  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 4650875 - 4650788
Alignment:
Q  105 tttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttgagatatttt 192  Q
    |||||||| || ||||||||| | || |||||||||||||  | ||| || ||||||||||||||||||||| |||||||||| |||||    
T  4650875 tttatttggtggtgtatttatcatgcatatgacatggctacat-ggatatgtatgctatttatccgctgcgatgtttttgagaaatttt 4650788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 11822513 - 11822432
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattt 147  Q
    |||||||||||| |||||| | ||||| | ||||| |||||| |||| |||| |||| ||| | |||||||||||||||||||    
T  11822513 tatgttgttgagattttactcccatgttgagattgaagattt-atttaatgacgtatgtataatgcttatgacatggctattt 11822432  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 294017 - 293956
Alignment:
Q  67 tgttgttgaggttttacacacatgtcggga-ttggagattttatttgatgatgtatttatga 127  Q
    |||||||||| |||||| || ||||||||| ||||||||||||| || |||||| |||||||    
T  294017 tgttgttgagattttacccatatgtcgggatttggagattttatatggtgatgtttttatga 293956  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 19381047 - 19380962
Alignment:
Q  95 gattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttt 181  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||| ||| ||||    
T  19381047 gattggagattt-atttgatgatgtatttatgatgcttatgacatggcta-tttggagatgtatgctatttatctgctgtgacatttt 19380962  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 18366112 - 18366220
Alignment:
Q  105 tttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttgagatat-tttaatgtgcatg 202  Q
    ||||| ||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||| || ||| |  ||||||    
T  18366112 tttatatgacgatgtatttatgatgcttatgacatggcta-tttggagatgtatgctatttatcc-ctacgacgtttttgagaaatatttca--tgcatg 18366207  T
Q  203 ttgtttgagtttt 215  Q
    |||||||||||||    
T  18366208 ttgtttgagtttt 18366220  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 12182366 - 12182224
Alignment:
Q  48 tttattctggattgaattatgttgttgaggttttacacacatgtcggg-attggagattttatttgatgatgtatttatgaagcttatgacatggctatt 146  Q
    |||||| |||||||| ||||||||||||| |||||| ||| ||||||| |||||||||||||| || |||||||| | || || | ||||||||  ||||    
T  12182366 tttattttggattgatttatgttgttgagattttactcacttgtcgggaattggagattttatatggtgatgtatgtttg-agttgatgacatgtatatt 12182268  T
Q  147 ttggagat-tatgctatttatccgctgcgacgtttttgagatattt 191  Q
    |||||||| |||| ||| ||||| ||||||  ||||||||| ||||    
T  12182267 ttggagatgtatgttatatatcctctgcga--tttttgagaaattt 12182224  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 12245822 - 12245666
Alignment:
Q  53 tctggattgaattatgttgttgaggttttacacacatgtcgggatt-ggagattttatttgatgatgtatttatgaagcttatgacatggctattttgga 151  Q
    |||||||| | ||||||| | ||| |||| | || ||||||||||| ||||||||||| ||||||||||  |||  | |||||||||||  |||||||||    
T  12245822 tctggatttatttatgttatggagattttgcccatatgtcgggatttggagattttatatgatgatgta--tattgatcttatgacatgtatattttgga 12245725  T
Q  152 gat-tatgctatttatccgctgcgacgtttttgagatatttta-atgtgcatgttgtttga 210  Q
    ||| |||| | | |||||||||||||  | |||||| |||||| || ||||||||||||||    
T  12245724 gatgtatgatttatatccgctgcgac--tgttgagaaattttatatatgcatgttgtttga 12245666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 14302897 - 14302986
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcggga-ttggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat 154  Q
    |||||||||||| |||||| || ||||||||| ||| |||||||||||| ||  |||| |||| || ||||||||||  ||||||||||||    
T  14302897 tatgttgttgagattttacccatatgtcgggatttgtagattttatttggtgccgtatgtatg-agtttatgacatgtatattttggagat 14302986  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 16205998 - 16205969
Alignment:
Q  218 tcttgaatatttgtattattcacgtgtttt 247  Q
    ||||||||||||||||||||||||||||||    
T  16205998 tcttgaatatttgtattattcacgtgtttt 16205969  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 3135244 - 3135157
Alignment:
Q  105 tttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttgagatatttt 192  Q
    |||||| | |||||||||||||| |  |||||||||| || ||||||||| |||||||| |||  |||||||| ||||||||| |||||    
T  3135244 tttattgggtgatgtatttatgatgtatatgacatggtta-tttggagatgtatgctatgtattggctgcgacttttttgagaaatttt 3135157  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 15940105 - 15940193
Alignment:
Q  95 gattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttg 183  Q
    ||||||||||||  |||| ||| |||||||||   ||||||||||||||| || |||||| |||||||||||||||||||||||||||||    
T  15940105 gattggagatttgttttggtgaagtatttatgtttcttatgacatggctactt-ggagatgtatgctatttatccgctgcgacgtttttg 15940193  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 16374106 - 16373995
Alignment:
Q  66 atgttgttgaggttttacacacatgtcgggatt-ggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatt 163  Q
    ||||||||||| |||||| || |||| |||||| |||||||||||||| ||| |||| |||| || |||||||||   |||||||||||| |||| | |     
T  16374106 atgttgttgagattttacccatatgttgggatttggagattttatttggtgacgtatgtatg-agtttatgacatatatattttggagatgtatgtttta 16374008  T
Q  164 tatccgctgcgac 176  Q
    |||||||||||||    
T  16374007 tatccgctgcgac 16373995  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 9192345 - 9192263
Alignment:
Q  65 tatgttgttgaggttttacacacatgtcgggattggagattttatttgatgatgtatttatgaagcttatgacatggctattt 147  Q
    |||||||||||  |||||| ||  ||| | ||||  ||||| ||| ||||||||||||| ||| |||||||||||||||||||    
T  9192345 tatgttgttgatattttactcatgtgttgagattacagattctatctgatgatgtatttgtgatgcttatgacatggctattt 9192263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 25782585 - 25782614
Alignment:
Q  218 tcttgaatatttgtattattcacgtgtttt 247  Q
    ||||||||||||||||||||||||||||||    
T  25782585 tcttgaatatttgtattattcacgtgtttt 25782614  T

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Target: scaffold0329 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 1199 - 1122
Alignment:
Q  109 tttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttgaga 186  Q
    |||| |||||||||||||| || |||||| |||||| || |||||| ||||||||||||||| ||||||||||||||||    
T  1199 tttggtgatgtatttatgatgcatatgacgtggctactt-ggagatgtatgctatttatccggtgcgacgtttttgaga 1122  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 8411 - 8329
Alignment:
Q  39 gtctttatgtttattctggattgaattatgttgttgaggttttacacacatgtcggga-ttggagattttatttgatgatgtat 121  Q
    ||||||||||||||||| ||||| ||| || ||||||| | |||| || ||||||||| ||||||||||||| || ||||||||    
T  8411 gtctttatgtttattctagattg-attgtgatgttgagatattacccatatgtcgggatttggagattttatatggtgatgtat 8329  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 16243826 - 16243730
Alignment:
Q  95 gattggagattttatttgatgatgtatttatgaagcttatgacatggctattttggagat-tatgctatttatccgctgcgacgtttttgagatatttt 192  Q
    |||||||||||| ||||| |||| ||||||||| |  |||||| ||| || || |||| | ||||||||||||||| |||||||||||||||| |||||    
T  16243826 gattggagattt-atttggtgatatatttatgatgtatatgacctggatactt-ggaggtgtatgctatttatccgttgcgacgtttttgagaaatttt 16243730  T

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Target: scaffold1923 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1923
Description:

Target: scaffold1923; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 424 - 375
Alignment:
Q  155 tatgctatttatccgctgcgacgtttttgagatattttaatgtgcatgtt 204  Q
    ||||||||||||||||||| | |||||||||| |||||||| || |||||    
T  424 tatgctatttatccgctgctaagtttttgagaaattttaatatgtatgtt 375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 20707735 - 20707706
Alignment:
Q  218 tcttgaatatttgtattattcacgtgtttt 247  Q
    ||||||||||||||||||||||||||||||    
T  20707735 tcttgaatatttgtattattcacgtgtttt 20707706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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