View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17269_low_12 (Length: 290)
Name: NF17269_low_12
Description: NF17269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17269_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 279
Target Start/End: Complemental strand, 29318836 - 29318560
Alignment:
| Q |
3 |
ttagtggcaattcttctcagtcattgagttgtttctattttgccattctttatgctactggaattgtgaatgagtttggacctgaaagtaatggtggcgt |
102 |
Q |
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| T |
29318836 |
ttagtggcaattcttctcagtcattgagttgtttctattttgtcattctttatgctactggaattgtgaatgagtttggacctgaaagtaatggtggtgt |
29318737 |
T |
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| Q |
103 |
tacttgtgcttttagtttacctgtttcacaagttggttctggttctgtaaatattatattaaggaagcatattatttttaggactggtgatgtggaattt |
202 |
Q |
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| T |
29318736 |
ttcttgtgcttttagtttacctgtttcacaagttggttctggttctgtaaatattatattaaggaagcatattatttttaggactggtgatgtggaattt |
29318637 |
T |
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| Q |
203 |
gaattggattgcagctatttttaatgtagtaatatactagcatccagatgggttccgcgctaatgtatgtatatatt |
279 |
Q |
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| T |
29318636 |
gaattggattgcagctatttttaatgtagtaatatactagcatccagatggattccgcgctaatgtatgtatatatt |
29318560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 717647 - 717796
Alignment:
| Q |
1 |
agttagtggcaattcttctcagtcattgagttgtttctattttgccattctttatgctactggaattgtgaatgagtttggacctgaaagtaatggtggc |
100 |
Q |
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| T |
717647 |
agttagtggtaatgattctcagtctttgagttgtttctactttgcaattctttatgctgctggaattgttaatgagtttggacctgaaagtaatggtgct |
717746 |
T |
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| Q |
101 |
gttacttgtgcttttagtttacctgt---ttcacaagttggttctggttc |
147 |
Q |
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| T |
717747 |
gttacttgtgcttttagtttacctgtttattcacaagttggttctggttc |
717796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 26942217 - 26942270
Alignment:
| Q |
21 |
agtcattgagttgtttctattttgccattctttatgctactggaattgtgaatga |
75 |
Q |
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| T |
26942217 |
agtcattgagttgtt-ctattttgcaattctttatgctgctggaattgtgaatga |
26942270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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