View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17269_low_3 (Length: 615)
Name: NF17269_low_3
Description: NF17269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17269_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 9 - 597
Target Start/End: Original strand, 24545525 - 24546114
Alignment:
| Q |
9 |
gagtagcaaaggaggagtctatcctcaacatatattcttagagtatgttttatttgttcctgctggtctaactgaggagggtcgtcgggatatgctagcc |
108 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24545525 |
gagtatcaaaggaggagtctatcctcaacatatgttcttagagtatgttttatttgttcctgctggtctaactgaggagggtcgtcgggatatgctagcc |
24545624 |
T |
|
| Q |
109 |
tcttccttaattcatt-gcaacacacttttagtggctgcagttggtgatccaggtgtttatgcggagagggacatctcgagggagaagccgaagggtttg |
207 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24545625 |
tcttccttaattgatttgcaacacacttttagtggctgcagttggtgatccaggtgtttatgcggagagggacatctcgagggagaagccgaagggtttg |
24545724 |
T |
|
| Q |
208 |
gctgcgggttgtgatgcctcgtccatcaagaaggtaaaggaagagatggtcttcaaggctagggagacaggtgaactatatgtggattgctttcttgtgc |
307 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24545725 |
gctgcgggttgtgatgccacgtccatcaagaaggtaaaggaagagatggtcttcaaggccagggagacaggtgaactatatgtggattgctttcttgtgc |
24545824 |
T |
|
| Q |
308 |
tgatggtttgtctaaggtgttggggactcaggtttaggttctctccgaccaggtggccacgttcaagaatgataaactgagatcctctagtttgcaaatg |
407 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24545825 |
tgatggtttgtctaaggtgttggggactcgggtttaggttctctccgaccaggtggccacgttcaagaatgataaactgagatcctctagtttgcagatg |
24545924 |
T |
|
| Q |
408 |
aagtatttcatttgactcagaccaattaacaatatcttccatggggattctcctttgtgaatgagatcctctatgctcatgttcaccaataataatattg |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24545925 |
aagtatttcatttgactcagaccaattaacaatatcttcaatggggattctcctttgtgaatgagatcctctatgctcatgttcaccaataataatattg |
24546024 |
T |
|
| Q |
508 |
taatcaacaatataacaccaaaggtatgttatgatttaattgaagttgacttaatgaatttcatatttgccttcttttaatatagttaac |
597 |
Q |
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| T |
24546025 |
taatcaacaatataacaccaaaggtatgttatgatttaattgaagttgacttaatgaatttcatatttgccttcttttaatatagttaac |
24546114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 4451085 - 4451037
Alignment:
| Q |
15 |
caaaggaggagtctatcctcaacatatattcttagagtatgttttattt |
63 |
Q |
| |
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|||||||||||||| || ||||| | ||||||||||||||||||||||| |
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| T |
4451085 |
caaaggaggagtctctcgtcaacctttattcttagagtatgttttattt |
4451037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36758864 - 36758908
Alignment:
| Q |
19 |
ggaggagtctatcctcaacatatattcttagagtatgttttattt |
63 |
Q |
| |
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|||||||||| |||||||| | ||| ||||||||||||||||||| |
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| T |
36758864 |
ggaggagtctctcctcaacttttatccttagagtatgttttattt |
36758908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36759648 - 36759692
Alignment:
| Q |
19 |
ggaggagtctatcctcaacatatattcttagagtatgttttattt |
63 |
Q |
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|||||||||| |||||||| | ||| ||||||||||||||||||| |
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| T |
36759648 |
ggaggagtctctcctcaacttttatccttagagtatgttttattt |
36759692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36760431 - 36760475
Alignment:
| Q |
19 |
ggaggagtctatcctcaacatatattcttagagtatgttttattt |
63 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||||||||||| |
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| T |
36760431 |
ggaggagtctctcctcaacttttatccttagagtatgttttattt |
36760475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36761214 - 36761258
Alignment:
| Q |
19 |
ggaggagtctatcctcaacatatattcttagagtatgttttattt |
63 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||||||||||| |
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|
| T |
36761214 |
ggaggagtctctcctcaacttttatccttagagtatgttttattt |
36761258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36761997 - 36762041
Alignment:
| Q |
19 |
ggaggagtctatcctcaacatatattcttagagtatgttttattt |
63 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||||||||||| |
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| T |
36761997 |
ggaggagtctctcctcaacttttatccttagagtatgttttattt |
36762041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36766211 - 36766255
Alignment:
| Q |
19 |
ggaggagtctatcctcaacatatattcttagagtatgttttattt |
63 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||||||||||| |
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| T |
36766211 |
ggaggagtctctcctcaacttttatccttagagtatgttttattt |
36766255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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