View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17269_low_4 (Length: 560)
Name: NF17269_low_4
Description: NF17269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17269_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 12466412 - 12465863
Alignment:
| Q |
1 |
cacctcaaacggactatattaatagaaaaatttccaccccaaatggattatattaatagaaaaatggtggaaattaatttctgatagtaggtcaaggttt |
100 |
Q |
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|||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12466412 |
caccccaaatggattatattaatagaaaaatttccaccccaaatggattatattaatagaaaaatggtggaaattaatttctgatagtaggttaaggttt |
12466313 |
T |
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| Q |
101 |
tggaaaaaattatgtgctcggggcaggaatt----ggaaatacnnnnnnnnattnnnnnnnttattgcactatggagatggagactatgaggagattcct |
196 |
Q |
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| T |
12466312 |
tggaaaaaaatctgtgctcgaggcgggaattaattggaaatacttttttttattaaaaaaattattgcactatggagatggagactatgaggagattcct |
12466213 |
T |
|
| Q |
197 |
tgaaattcgtcggagacggagttcaatttctcacccccatcaaaaatcagatagggtaacgtgtaactataatcaatgacaaggacgaaaaagttgaaac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
12466212 |
tgaaattcgtcggagacggagttcaatttctcacccccatcaaaaatcagatagggtaacgtgtaactataatcaaagacaaggacgagaaagttgaaac |
12466113 |
T |
|
| Q |
297 |
ttgtacccgctccgctccattgtgattattgacatgtcacatgcgtattaaatattgaatattgtttccttccctctttcataatttgttttcccaataa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12466112 |
ttgtacccgctccgctccattgtgattattgacatgtcacatgcgtattaaatattgaatattgtttccttccctctttcataatttgttttcccaataa |
12466013 |
T |
|
| Q |
397 |
tccttttggttctaaaatttatt-ttttccccatccaatttgatatatgcaggaactactacaggtgtactcacaagtttgatcaaagatgcctagcaac |
495 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12466012 |
tccttttggttctaaaatttatttttttccctatccaatttgatatatgcaggaactactacaggtgtactcacaagtttgatcaaagatgcctaacaac |
12465913 |
T |
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| Q |
496 |
caagcatgtgcatagaattcaacaaaaacctcccttgtataagacaacct |
545 |
Q |
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| T |
12465912 |
caagcatgtgcatagaattcaacaaaaacctcccttgtataagacaacct |
12465863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 438 - 545
Target Start/End: Original strand, 304001 - 304108
Alignment:
| Q |
438 |
atatatgcaggaactactacaggtgtactcacaagtttgatcaaagatgcctagcaaccaagcatgtgcatagaattcaacaaaaacctcccttgtataa |
537 |
Q |
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||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| || ||||| ||||||||| | || |||||||||||||| |
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| T |
304001 |
atatatgcagggactactacaggtgtactcacaagatagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataa |
304100 |
T |
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| Q |
538 |
gacaacct |
545 |
Q |
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||| |||| |
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| T |
304101 |
gaccacct |
304108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 12466416 - 12466382
Alignment:
| Q |
31 |
tttccaccccaaatggattatattaatagaaaaat |
65 |
Q |
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| T |
12466416 |
tttccaccccaaatggattatattaatagaaaaat |
12466382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 428 - 539
Target Start/End: Original strand, 479040 - 479151
Alignment:
| Q |
428 |
atccaatttgatatatgcaggaactactacaggtgtactcacaagtttgatcaaagatgcctagcaaccaagcatgtgcatagaattcaacaaaaacctc |
527 |
Q |
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|||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||| | ||||||| || ||||||| ||||||| |||| |||| |
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| T |
479040 |
atccaatttgatatatacaggacctactataggtgtactcacaagtatgatcaaagatgcaaaacaaccaaacaagtgcataaaattcaagaaaatcctc |
479139 |
T |
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| Q |
528 |
ccttgtataaga |
539 |
Q |
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|||||||||||| |
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| T |
479140 |
ccttgtataaga |
479151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 44830350 - 44830411
Alignment:
| Q |
31 |
tttccaccccaaatggattatattaatagaaaaatggtggaaattaatttctgatagtaggt |
92 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
44830350 |
tttctaccccaaatggattagattaatagaaaaatggtggaaattaatttatggtagtaggt |
44830411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 34886166 - 34886207
Alignment:
| Q |
39 |
ccaaatggattatattaatagaaaaatggtggaaattaattt |
80 |
Q |
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| T |
34886166 |
ccaaatgtattagattaataggaaaatggtggaaattaattt |
34886207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 40486032 - 40486076
Alignment:
| Q |
36 |
accccaaatggattatattaatagaaaaatggtggaaattaattt |
80 |
Q |
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| T |
40486032 |
accccaaatggattaaattaatagaaaaattgtggaaatcaattt |
40486076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 31399183 - 31399122
Alignment:
| Q |
31 |
tttccaccccaaatggattat-attaatagaaaaatggtggaaattaatttctgatagtagg |
91 |
Q |
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|||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||| |
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| T |
31399183 |
tttccaccccaaatggattaagattaatagaaaaaatattgaaattaaattctgatagtagg |
31399122 |
T |
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