View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_high_1 (Length: 692)
Name: NF1726_high_1
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 26226045 - 26226398
Alignment:
| Q |
10 |
gcataggtcggagttcgaatctcatattcttaatctatttaccttaaagggatgatttttaaccaataaactactcagnnnnnnnnnnnttaatatatta |
109 |
Q |
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| T |
26226045 |
gcataggtcggagttcgaatctcatattcttaatctatttacc------ggatgatttttaaccaataaactactcagaaaaaaaa-----aaaatatta |
26226133 |
T |
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| Q |
110 |
ttagcccttatacttcacaaaaatagtatatattttccttnnnnnnngaga--gtatatttttaatttttcacatagtatattctaaatataagatcatc |
207 |
Q |
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| T |
26226134 |
ttagcccttatacttcacaaaaatagtatatattttccttaaaaaaagaaaaagtatatttttagtttttcacatagtatattctaaatataagatcatc |
26226233 |
T |
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| Q |
208 |
ttatcttttctataagatcatctttaaatttaaactacattaatcattatatttaataacatacacctacttaatttactacatatcttttctgcaatgt |
307 |
Q |
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| T |
26226234 |
ttatcttttctataagatcatctttaaatttaaactacattaatcattatatttaataacatacacctacttaatttactacatatcttttctgcaatgt |
26226333 |
T |
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| Q |
308 |
aattaataaacttttaaaagcaatatcaattgtccacagtttatgtcatcttttttaaatatcct |
372 |
Q |
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| T |
26226334 |
aattaataaacttttaaaagcaatatcaattgtccacagtttatgtcatcttttctaaatatcct |
26226398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 425 - 612
Target Start/End: Original strand, 26226410 - 26226602
Alignment:
| Q |
425 |
tcgtaaaggttgaccaccgccgttgaagttctagttaggggctt-gcttccaacgatgctttgaagtctataaaaaatgagaaactttggtttggttcta |
523 |
Q |
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| T |
26226410 |
tcgtaaaggttggc-accgccgttgaagttctagttaggggctttgcttccaacgatgctttgaagtctataaaaaatgagaaactttggtttggttcta |
26226508 |
T |
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| Q |
524 |
cctgtagtcatgagaagcttttaatatgaaataatttca-----taaagagaaactcatgcgaaaacaaaaatgtttcttggacacaaaattcg |
612 |
Q |
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| T |
26226509 |
cctgtagtcatgagaagcttttaatatgaaataatttcatttggtaaagagaaactcatgcgaaaacaaaaatgtttcttgaacacaaaattcg |
26226602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 528 - 675
Target Start/End: Original strand, 26222180 - 26222336
Alignment:
| Q |
528 |
tagtcatgagaagcttttaatatgaaataatttcat------aaagagaaactcatgcgaaaacaaaaatgtttcttggacacaaaattcgatatt---a |
618 |
Q |
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| T |
26222180 |
tagtcatgagaagcttttaatatgaaataatttcattttggtaaagagaaactcatgcgaaaacaaaaatgtttcttgaacacaaaattcgatattaaca |
26222279 |
T |
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| Q |
619 |
taatcgtatatgcgtgttgtttccgacatttatgttgtttattctctttcctaattt |
675 |
Q |
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| T |
26222280 |
ttataatatcgacatgttgttttcgacatttatgttgtttattcactctcttaattt |
26222336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 633 - 677
Target Start/End: Original strand, 26227489 - 26227533
Alignment:
| Q |
633 |
tgttgtttccgacatttatgttgtttattctctttcctaatttct |
677 |
Q |
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| T |
26227489 |
tgttgtttccgacatttatgttgtttattctctttcctaatttct |
26227533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 26222150 - 26222182
Alignment:
| Q |
383 |
taatttagtaaaggggttaggtcctatatatag |
415 |
Q |
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| T |
26222150 |
taatttagtaaaggggttaggtcctatatatag |
26222182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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