View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_high_16 (Length: 249)
Name: NF1726_high_16
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_high_16 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 47649616 - 47649375
Alignment:
| Q |
8 |
agagatgaagttaaaagaagtagagactcaactcgaaaaggagcgaaacatgagggaagaaatgacggcaaaatttgaagagagtctaaggcaactagga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47649616 |
agagatgaagttaaaagaagtagagactcaactcgaaaaggagcgaaacatgagggaagaaatgacggcaaaatttgaagagagtctaaggcaactagga |
47649517 |
T |
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| Q |
108 |
gaaaagatggagaaacaagttgaggaaaaaatggcaaatatgtttagtcaaatgatgaatttctaagtaagtatataaatgaccatagttggtnnnnnnn |
207 |
Q |
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| T |
47649516 |
gaaaagatggagaaacaagttgaggaaaaaatggcaaatatgtttagtcaaatgatgaatttctaagtaagtatataaatgaccatagttggtaaaaaaa |
47649417 |
T |
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| Q |
208 |
tataatacaaaatttttaattttgtattatatattaaaatct |
249 |
Q |
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| T |
47649416 |
tataatacaaaatttttaattttgtattatatattaaaatct |
47649375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 91780 - 91601
Alignment:
| Q |
8 |
agagatgaagttaaaagaagtagagactcaactcgaaaaggagcgaaacatgagggaagaaatgacggcaaaatttgaagagagtctaaggcaactagga |
107 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
91780 |
agagatgaagttaaaagaagttgagactcaactcggaaaagagcgaaacatgagggaagaaatgacggcaaaatttgaagagagtcaaaggcaactaggg |
91681 |
T |
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| Q |
108 |
gaaaagatggagaaacaagttgaggaaaaaatggcaaatatgtttagtcaaatgatgaatttctaagtaagtatataaat |
187 |
Q |
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| T |
91680 |
gaaaagatggagaaacaagttgaggaaaaaatggcaaatatgtttagtcaaatgatgaatttcaaagtaagtatataaat |
91601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 91595 - 91563
Alignment:
| Q |
217 |
aaatttttaattttgtattatatattaaaatct |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
91595 |
aaatttttaattttgtattatatattaaaatct |
91563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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