View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726_high_18 (Length: 236)
Name: NF1726_high_18
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36676621 - 36676841
Alignment:
| Q |
1 |
tctctcactcttgcttaaataagattatttttaaatacaaaagagaagtgtgacacaatacttaaatggtgtattccaaaatttgcaatagtatataaaa |
100 |
Q |
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| T |
36676621 |
tctctcattctttcttaaataatattatttttaaatacaaaagagaagtgtgacacaatacttaaatggggtattccaaaatttgcaatagtatataaaa |
36676720 |
T |
|
| Q |
101 |
aataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggatgatgaagtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676721 |
aataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggatgatgaagtaat |
36676820 |
T |
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| Q |
201 |
taattaaaaaatattatacaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36676821 |
taattaaaaaatattatacaa |
36676841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36686703 - 36686923
Alignment:
| Q |
1 |
tctctcactcttgcttaaataagattatttttaaatacaaaagagaagtgtgacacaatacttaaatggtgtattccaaaatttgcaatagtatataaaa |
100 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36686703 |
tctctcattctttcttaaataatattatttttaaatacaaaagagaagtgtgacacaatacttaaatggggtattccaaaatttgcaatagtatataaaa |
36686802 |
T |
|
| Q |
101 |
aataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggatgatgaagtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36686803 |
aataaaggtttgggaaggaagcaaagtgtgacacaagtcataatatccttatcatcttagccttactcaactgggtaacatttttggatgatgaagtaat |
36686902 |
T |
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| Q |
201 |
taattaaaaaatattatacaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36686903 |
taattaaaaaatattatacaa |
36686923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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