View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1726_high_2 (Length: 645)

Name: NF1726_high_2
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1726_high_2
NF1726_high_2
[»] chr5 (7 HSPs)
chr5 (174-406)||(27561954-27562186)
chr5 (175-404)||(36669011-36669239)
chr5 (15-175)||(27562234-27562394)
chr5 (15-175)||(36669288-36669449)
chr5 (435-624)||(36668673-36668870)
chr5 (435-575)||(27563153-27563291)
chr5 (594-628)||(27561796-27561830)
[»] chr1 (3 HSPs)
chr1 (174-399)||(29411503-29411725)
chr1 (427-623)||(29411206-29411410)
chr1 (15-175)||(29411773-29411938)
[»] chr8 (2 HSPs)
chr8 (15-171)||(26928772-26928930)
chr8 (207-289)||(26928621-26928703)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 174 - 406
Target Start/End: Complemental strand, 27562186 - 27561954
Alignment:
Q  174 agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27562186 agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc 27562087  T
Q  274 ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  27562086 ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggaaaatgatcaacttcaacattggatc 27561987  T
Q  374 gctgaattggatagatataaatcattaacagtg 406  Q
    |||||||||||||||||||||||||||||||||    
T  27561986 gctgaattggatagatataaatcattaacagtg 27561954  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 175 - 404
Target Start/End: Complemental strand, 36669239 - 36669011
Alignment:
Q  175 gaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatct 274  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  36669239 gaacttcaggtttgtaaatttgaactatctgcaatggttttgtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatct 36669141  T
Q  275 tttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatc 373  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||     
T  36669140 tttcatgtatgtttatt-ccagaatgaactaaatgatgataagtatgtacgcacttcccgagtatactctttggcaaaggatcaacttcaacattggatt 36669042  T
Q  374 gctgaattggatagatataaatcattaacag 404  Q
    |||||||||||||||| ||||||||| ||||    
T  36669041 gctgaattggatagatttaaatcattgacag 36669011  T

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Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 27562394 - 27562234
Alignment:
Q  15 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  27562394 gcagagagagccatggttttgtctgtgttgaagaattcaattgaggaagccaaggttttattttttgcgatttctttccttctgtcattcatttgtcgat 27562295  T
Q  115 tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag 175  Q
    ||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  27562294 tctgtctgagatatatgcttggctgatgtcatagatagtgaattctgatcgtctttctgag 27562234  T

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Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 36669449 - 36669288
Alignment:
Q  15 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat 114  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||  | |||||| ||||| | ||||||||||||||||||||||||||||||||    
T  36669449 gcagagagagctatgggtttgtctgagttgaagaattcaattgaggaagtgaaggttttattttt-gtgatttctttccttctgtcattcatttgtcgat 36669351  T
Q  115 tct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag 175  Q
    |||  || | |||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  36669350 tctctgtctaagatttatgcttggctgatatcatagatagtgaatgctgatcgtctttctgag 36669288  T

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Target: chr5; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 624
Target Start/End: Complemental strand, 36668870 - 36668673
Alignment:
Q  435 tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc 534  Q
    |||||||| |||||| ||||   ||||| |||||||||||||| ||||  ||||| |||| ||| |||||||||| |||||||||||||| |||||||||    
T  36668870 tttaggctagcaggactaacattgcaaaacgggagaaggaattgaattctaaattggagtctgcggttaatgcaaggcatatccatgacatttctgactc 36668771  T
Q  535 tatgactgatgagctcaagattcagttgcaaaagtgtatta--------aatgatgttgaaatcaaggtggaagaggccaaagaggatactggtctgt 624  Q
    || ||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||| |||||||||||||| | |||| ||||||||    
T  36668770 taggactgatgagctcaagattcagttgcaaaagtgtattaatgaaaggaatgatcttgaaatcaagatggaagaggccaaacaagatattggtctgt 36668673  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 575
Target Start/End: Original strand, 27563153 - 27563291
Alignment:
Q  435 tttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaattctgactc 534  Q
    ||||||||||||||  ||||  | ||||  ||||||||||| | ||||||||||| |||| ||||| |||||||| || ||||| ||||||||||||  |    
T  27563153 tttaggctggcagggctaacatctcaaaatgggagaaggaactgaatttgaaattggagtctgctgataatgcaaggcgtatccttgacaattctga--c 27563250  T
Q  535 tatgactgatgagctcaagattcagttgcaaaagtgtatta 575  Q
    |||||| ||||  ||| || |||||||||| || |||||||    
T  27563251 tatgaccgatggcctcgagcttcagttgcagaaatgtatta 27563291  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 27561830 - 27561796
Alignment:
Q  594 gtggaagaggccaaagaggatactggtctgtatat 628  Q
    |||||||||||||||||||||||||||||||||||    
T  27561830 gtggaagaggccaaagaggatactggtctgtatat 27561796  T

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Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 174 - 399
Target Start/End: Complemental strand, 29411725 - 29411503
Alignment:
Q  174 agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc 273  Q
    |||||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| ||| |  |||| | | ||||||||||||||||||||||    
T  29411725 agaacttcaggtttgtcaatttgagctatctgcaatggtgttatcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatc 29411626  T
Q  274 ttttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggat 372  Q
    |||||     ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||| ||| |||||    
T  29411625 ttttc----gtgtttatttccagaatgaactaaatgatgataagtatgtacgcaattcccgagtatactctttggcaaatgatcaacttcaacactggat 29411530  T
Q  373 cgctgaattggatagatataaatcatt 399  Q
     ||||||||||| ||||||||||||||    
T  29411529 tgctgaattggacagatataaatcatt 29411503  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 427 - 623
Target Start/End: Complemental strand, 29411410 - 29411206
Alignment:
Q  427 aatgcaactttaggctggcaggattaactacgcaaagcgggagaaggaattcaatttgaaattagagtgtgctgttaatgcaaagcatatccatgacaat 526  Q
    ||||||| |||||||||||||| |||||  | |||| ||||||||||| || || |||||||| |||| |||||||||||||| ||||||||||||||||    
T  29411410 aatgcaattttaggctggcagggttaacgtctcaaaacgggagaaggagttgaagttgaaattggagtctgctgttaatgcaaggcatatccatgacaat 29411311  T
Q  527 tctgactctatgactgatgagctcaagattcagttgcaaaagtgtatta--------aatgatgttgaaatcaaggtggaagaggccaaagaggatactg 618  Q
    |||||||||| || ||||||||||||| |||| ||||| ||||||||||        |||||| ||||||| | | |||||||||||||| |||||||||    
T  29411310 tctgactctaggattgatgagctcaagcttcaattgcagaagtgtattattgaaaagaatgatcttgaaattacgatggaagaggccaaacaggatactg 29411211  T
Q  619 gtctg 623  Q
    |||||    
T  29411210 gtctg 29411206  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 29411938 - 29411773
Alignment:
Q  15 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgattt-ctttccttctgtcattcattt--gtc 111  Q
    ||||| || |||||||||||||| | ||||||| | |||||||||||||||| |||||   |||||| ||||| |||||||||   |||||||||  |||    
T  29411938 gcagatagggccatgggtttgtccgagttgaagcactcaattgaggaagccaaggtttaactttttgtgattttctttccttccaccattcatttttgtc 29411839  T
Q  112 gattct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag 175  Q
    ||||||  || | |||| |||| || ||||||||||||||| ||||||||||||||||||||||||    
T  29411838 gattctttgtctaagatgtatgtttggctgatgtcatagatcgtgaatgctgatcgtctttctgag 29411773  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 26928930 - 26928772
Alignment:
Q  15 gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat 114  Q
    ||||||||||||||   |||||| |  ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  26928930 gcagagagagccattactttgtccgacttgaaaaattcaattgaggaagccaaggttttattttttgtgatttctttccttctctcattcatttgtcgat 26928831  T
Q  115 --tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttc 171  Q
      ||||| | |||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  26928830 tctctgtctaagatatatgcttggctgatgtcacagatagtgaatgatgatcgtctttc 26928772  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 26928703 - 26928621
Alignment:
Q  207 aatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttta 289  Q
    |||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| ||||||    
T  26928703 aatggttttgtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttta 26928621  T

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